PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG542500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family VOZ
Protein Properties Length: 560aa    MW: 62405.7 Da    PI: 5.093
Description VOZ family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG542500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1VOZ4265.9e-1312604771217
                  VOZ   1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaataksp 89 
                          p+psafl+pkcalwdc+rpa gse+++dycs++ha+la++e g+pgt+pv+rp+gidlkdg+lfaalsak+qgk+vgip cegaataksp
  Pavir.5KG542500.1.p 260 PAPSAFLRPKCALWDCPRPAIGSERWHDYCSMYHADLAVKEeGPPGTMPVIRPRGIDLKDGPLFAALSAKIQGKHVGIPICEGAATAKSP 349
                          89*************************************9879*********************************************** PP

                  VOZ  90 wnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeinelda 179
                          wna+elfdl ++ege+irewlffdkprraf+sgnrkqrslpdy+grgwhesrkqvmk+fgglkrsyymdpqps+s+ewhlyeyein++da
  Pavir.5KG542500.1.p 350 WNAPELFDLYIFEGESIREWLFFDKPRRAFDSGNRKQRSLPDYNGRGWHESRKQVMKDFGGLKRSYYMDPQPSNSYEWHLYEYEINDCDA 439
                          ****************************************************************************************** PP

                  VOZ 180 lalyrlelklvdekksakgkvskdsladlqkklgrlta 217
                          +alyrle+k++d+kk+ak+kv++++l+++q++++rl+a
  Pavir.5KG542500.1.p 440 FALYRLEFKSSDAKKNAKSKVACNPLSEIQQQMVRLSA 477
                          ************************************97 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0009414Biological Processresponse to water deprivation
GO:0009631Biological Processcold acclimation
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048578Biological Processpositive regulation of long-day photoperiodism, flowering
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MGKGPSSRAA SRHHQFRARA KTRVDDLQEM FSGLQSARKD SRPADAAVLE AQLQQMLREW  60
RSELSAPSPA SSLQGNTREL SDPPSETLRL LQLATADEED DATSKLVEQQ QQQQPPPPPP  120
PPPPANQSQG HALGCQDLKP EPREEEVDIA VAQPQPQLLG QGVLPNGAPA AAAVFHDQMY  180
YVNQELTVED FLYDDDYKIN LSGSNPDVLN NLEGIGQLEF PQFNFPQELP PNVYLDMSNC  240
GQSTGDVFLH MSDLLTTMTP APSAFLRPKC ALWDCPRPAI GSERWHDYCS MYHADLAVKE  300
EGPPGTMPVI RPRGIDLKDG PLFAALSAKI QGKHVGIPIC EGAATAKSPW NAPELFDLYI  360
FEGESIREWL FFDKPRRAFD SGNRKQRSLP DYNGRGWHES RKQVMKDFGG LKRSYYMDPQ  420
PSNSYEWHLY EYEINDCDAF ALYRLEFKSS DAKKNAKSKV ACNPLSEIQQ QMVRLSADSP  480
VDTKRTARGR TKANPIDVNT NIYSVPNTTV QANVPNAYQP VSEAHQMTYL NGSVVYGPHL  540
PYGYSAERGD FYWNSNDGT*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG542500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0424030.0BT042403.1 Zea mays full-length cDNA clone ZM_BFb0220N09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818470.10.0transcription factor VOZ1-like
SwissprotQ9SGQ01e-154VOZ1_ARATH; Transcription factor VOZ1
TrEMBLA0A3L6SN530.0A0A3L6SN53_PANMI; Transcription factor VOZ1
STRINGPavir.Ea02856.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23433888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28520.21e-142vascular plant one zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yasui Y,Kohchi T
    VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis.
    Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5
    [PMID:25351333]
  3. Kumar S,Choudhary P,Gupta M,Nath U
    VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition.
    Plant Physiol., 2018. 176(4): p. 2917-2930
    [PMID:29507119]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]