PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG547300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 389aa    MW: 40316.1 Da    PI: 5.5749
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG547300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.3e-18267301135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Pavir.5KG547300.1.p 267 CLHCETDKTPQWRTGPMGPKTLCNACGVRYKSGRL 301
                          99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.571261297IPR000679Zinc finger, GATA-type
SMARTSM004013.6E-18261311IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.3E-15261298IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.14E-15263324No hitNo description
CDDcd002021.61E-14266313No hitNo description
PROSITE patternPS003440267292IPR000679Zinc finger, GATA-type
PfamPF003201.4E-15267301IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MEAAAAAEYG YYGGGAAPRE RKPAGCGDHF VVDDLLVLPY DDDEEGDGEA APGDGEAPPC  60
LQPVKEEGGL GNFSADSSTV TALDSCSNSF SGLGDGDFAG EFCEPYDQLA ELEWLSNYMG  120
EGDDAFAAED LQKLKLISGG FSSAVNVPPA PVAPAAPASA ASAAQPGMFL PEAPVPAKAR  180
SKRSRVAPGN WSSRLLVLPP PPASPPSPAS MAISPAESGV SAQAFPAKKP SKPSRKKDAP  240
PVPQAQPSSA PGAQPGGSAA SAEGRRCLHC ETDKTPQWRT GPMGPKTLCN ACGVRYKSGR  300
LVPEYRPAAS PTFVMSKHSN SHRKVLELRR QNEVQHQPPH VIAGGGPGGI MHMPSPLLFD  360
GPAAPPVIAG DDHFLIHHHL GADYRQLI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.227510.0root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG547300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817761.10.0GATA transcription factor 12-like
TrEMBLA0A3L6R1110.0A0A3L6R111_PANMI; GATA transcription factor 12
STRINGPavir.Eb03102.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.15e-48GATA transcription factor 12