PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG592200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CPP
Protein Properties Length: 254aa    MW: 27674.1 Da    PI: 9.9804
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG592200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.86e-155897140
                  TCR  1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
                         k++kgC+ kks Cl+kYCeCf+a+  Cse+CkC dCkN e
  Pavir.5KG592200.1.p 58 KHNKGCHGKKSGCLQKYCECFQANILCSENCKCMDCKNFE 97
                         589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163416.306198IPR005172CRC domain
SMARTSM011143.5E-165899IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.3E-116196IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGATAPTVLT ILRMKLPGVK LLMLHWSVIQ MHSGLRLGAA HMQIGIMRCL AISLLVGKHN  60
KGCHGKKSGC LQKYCECFQA NILCSENCKC MDCKNFEGSE ERRSLFQGDH KNSVNMQQAT  120
NAAVNGAIGT TGFSSPSTSR KRKHIDPSLD HSNKEHVAQR NGHLPQKNAV PDGSIPISQS  180
VHPPTLGPFK VTYRPLLADI VKEADIKDLC KLLVGVSGEA AKAYAGRKTQ EERDAEKVKV  240
GDRRKMIRQV PEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-135810583130Protein lin-54 homolog
5fd3_B4e-135810583130Protein lin-54 homolog
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG592200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815944.11e-121LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD13e-51TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2T8IK131e-120A0A2T8IK13_9POAL; Uncharacterized protein
STRINGPavir.Ea03028.1.p1e-131(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47303657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-53Tesmin/TSO1-like CXC domain-containing protein