PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG599000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CPP
Protein Properties Length: 147aa    MW: 16187.6 Da    PI: 9.0836
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG599000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR39.89.1e-1364103242
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                          +kk CnC++s+Clk+Y eCfa+g++C+  C+C++C+N+ e+
  Pavir.5KG599000.1.p  64 KKKCCNCRNSRCLKLYWECFASGAHCDG-CNCTNCFNNPEN 103
                          799*************************.********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011148.0E-1263103IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163417.89864146IPR005172CRC domain
PfamPF036384.9E-965100IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MRPHQVVGHV VGHVLPRHAV PVAVPVPQLR PEPVQRAPVA VPLKPESPKP RSRLYEGKDS  60
TPTKKKCCNC RNSRCLKLYW ECFASGAHCD GCNCTNCFNN PENEVARREA IDATLERNPD  120
AFRPKIGSSP HANRNNVCSA VQVLFT*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG599000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0672401e-100BT067240.1 Zea mays full-length cDNA clone ZM_BFb0345D13 mRNA, complete cds.
GenBankHQ8586711e-100HQ858671.1 Zea mays clone UT1107 CPP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815944.19e-74LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD15e-38TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2T7DGG21e-72A0A2T7DGG2_9POAL; Uncharacterized protein
TrEMBLA0A2T7DGG71e-72A0A2T7DGG7_9POAL; Uncharacterized protein
TrEMBLA0A2T8IK064e-73A0A2T8IK06_9POAL; Uncharacterized protein
STRINGPavir.Ea03028.1.p4e-87(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47303657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.14e-29Tesmin/TSO1-like CXC domain-containing protein