PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG602500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 244aa    MW: 27227.6 Da    PI: 6.6966
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG602500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.11.1e-2552113259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK+++g+++pr YYrCt++   gCp++k+ve+s+ +dp ++ ++Y++eH+++
  Pavir.5KG602500.1.p  52 HDGYQWRKYGQKMIRGNTYPRCYYRCTFHqdhGCPATKHVEQSNsQDPPLFRVIYTNEHTCS 113
                          7**************************998999********975379*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-2539114IPR003657WRKY domain
SuperFamilySSF1182902.88E-2345113IPR003657WRKY domain
SMARTSM007745.5E-3751114IPR003657WRKY domain
PfamPF031062.3E-2553112IPR003657WRKY domain
PROSITE profilePS5081120.66753115IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAKRADYMAS SSGSSNGAHK RLLQDSRSYA QEHAKKRVHI STRTEYTYVP YHDGYQWRKY  60
GQKMIRGNTY PRCYYRCTFH QDHGCPATKH VEQSNSQDPP LFRVIYTNEH TCSSTRVSDY  120
MASSIHIQQI ADASLIKAET GIPLLTHCVA GDGLIKEEKD VIVSSLLTVI NGCDVAKSDV  180
GHAAMQENTP VLMASNSYEA IPSVSPVPLA ASDELKMDFV EPLESHWIEP LDLGWFMEHT  240
QTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-1337110269WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG602500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814595.11e-164probable WRKY transcription factor 67
TrEMBLA0A2T7DF921e-164A0A2T7DF92_9POAL; Uncharacterized protein
STRINGPavir.J31756.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118143139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66600.12e-19ABA overly sensitive mutant 3