PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG602500.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 208aa    MW: 22723.5 Da    PI: 5.7031
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG602500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.71.5e-1034772059
                         S-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
                 WRKY 20 fprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59
                           + YYrCt++   gCp++k+ve+s+ +dp ++ ++Y++eH+++
  Pavir.5KG602500.2.p 34 AKKCYYRCTFHqdhGCPATKHVEQSNsQDPPLFRVIYTNEHTCS 77
                         4578*****998999********975379*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007742.6E-102378IPR003657WRKY domain
PfamPF031061.5E-113276IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.4E-113278IPR003657WRKY domain
SuperFamilySSF1182907.19E-103277IPR003657WRKY domain
PROSITE profilePS508119.0983679IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MAKRADYMAS SSGSSNGAHK RLLQDSRSYA QEHAKKCYYR CTFHQDHGCP ATKHVEQSNS  60
QDPPLFRVIY TNEHTCSSTR VSDYMASSIH IQQIADASLI KAETGIPLLT HCVAGDGLIK  120
EEKDVIVSSL LTVINGCDVA KSDVGHAAMQ ENTPVLMASN SYEAIPSVSP VPLAASDELK  180
MDFVEPLESH WIEPLDLGWF MEHTQTG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG602500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814595.11e-128probable WRKY transcription factor 67
TrEMBLA0A2T7DF921e-128A0A2T7DF92_9POAL; Uncharacterized protein
STRINGPavir.J31756.1.p1e-142(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66600.18e-11ABA overly sensitive mutant 3