PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG602700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 341aa    MW: 36998.1 Da    PI: 6.287
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG602700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY681.5e-21114172259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK++++ +f+r Y++C  + +C++kkkv++++  p ++e+tY +eH+++
  Pavir.5KG602700.1.p 114 KDGYQWRKYGQKKIQNCNFSRYYFKCNRHrRCEAKKKVQQQDAGPPMFEVTYVNEHTCH 172
                          8*************************9888***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-24103173IPR003657WRKY domain
SuperFamilySSF1182902.88E-21108172IPR003657WRKY domain
SMARTSM007741.4E-25113173IPR003657WRKY domain
PfamPF031066.5E-22114172IPR003657WRKY domain
PROSITE profilePS5081116.317115169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MAFDPDAKLS DVLASGYDLN NQLQALLSRP LDSRGQELAM AFSQELSRVF LVSLSMLNSN  60
SSVAPEVRTG NSSGVSTPAK EKRARSDNGG VVTPTKKSRE EGIIRKEFTP SPHKDGYQWR  120
KYGQKKIQNC NFSRYYFKCN RHRRCEAKKK VQQQDAGPPM FEVTYVNEHT CHELRASDDD  180
AAAAAARMAS PWTTSRRHAL AGAVDTARGH GHGAGSAEEN EAMVSCLAAV VSGSVPPPPS  240
SGWPPAPEAS ASDPDAAGRS ATVADDEAMM TMTMMVDDTG FSWDPWWSLC PVEEAASGPQ  300
LVVMNPANHH RDDMHMDKDD AGGFADTVWP EHTCGAWRRA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG602700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972234.11e-131WRKY transcription factor WRKY62
TrEMBLA0A3L6SIS71e-175A0A3L6SIS7_PANMI; Uncharacterized protein
STRINGPavir.Ea03256.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132432632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-16WRKY DNA-binding protein 70