PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG602800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 327aa    MW: 34670.1 Da    PI: 6.8587
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG602800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY60.72.7e-19131192259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 
                           Dgy+WrKYGqK ++++++pr YYrC+++   gC+++k+v++++  d+    + Y ++H+++
  Pavir.5KG602800.1.p 131 YDGYQWRKYGQKRITNTRYPRCYYRCSFHrerGCRATKQVQQCSgGDQPQYLVLYFNDHTCD 192
                          59*************************998999*******9877257778999******996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-23115193IPR003657WRKY domain
SuperFamilySSF1182901.31E-20125193IPR003657WRKY domain
SMARTSM007749.3E-30130193IPR003657WRKY domain
PfamPF031067.8E-21132192IPR003657WRKY domain
PROSITE profilePS5081116.891132194IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MQAQSRLGVM SGGGGSMSAS EGEHEAVIRE LTRGRQLTAR LRAEALRALR GQGQAEATAA  60
LILQEVSRAF TVCLNIMGSP AGAPPPPPEM PTGLGAVVDA AAAAPSLLGP PRRSREDSIP  120
RQQTVTPSPH YDGYQWRKYG QKRITNTRYP RCYYRCSFHR ERGCRATKQV QQCSGGDQPQ  180
YLVLYFNDHT CDTAAAREPE AAATTRLDLL PGAALLAPRR GGLLDERGVQ EEHERQVLVS  240
SLARVLGGQH QFHQQAPPAP DAAAAATSAA VAVSVEPAPV VDAASGMPRI DVDVVGLDVM  300
DYDDVAGELC FGYSYGLPGG GGLLPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-141321911068OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG602800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0638612e-75BT063861.1 Zea mays full-length cDNA clone ZM_BFc0113G18 mRNA, complete cds.
GenBankEU9564872e-75EU956487.1 Zea mays clone 1564344 WRKY DNA binding domain containing protein mRNA, complete cds.
GenBankJX4699482e-75JX469948.1 Zea mays subsp. mays clone UT3209 WRKY-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818129.11e-159probable WRKY transcription factor 64
TrEMBLA0A3L6R2X71e-164A0A3L6R2X7_PANMI; Putative WRKY transcription factor 4
STRINGPavir.Ea03257.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125382837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.21e-14WRKY family protein