PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG618800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 191aa    MW: 19663.7 Da    PI: 6.5056
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG618800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00126385123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C+k+F++   L  H  +H
  Pavir.5KG618800.1.p 63 FECKTCSKRFPSFQALGGHRTSH 85
                         89**********99998888777 PP
2zf-C2H211.90.00069111133123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C  Cg  Fs    L  H+r+H
  Pavir.5KG618800.1.p 111 HECAVCGLEFSMGQALGGHMRRH 133
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.49E-66087No hitNo description
PfamPF139124.3E-126285IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.4296390IPR007087Zinc finger, C2H2
SMARTSM003550.186385IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SuperFamilySSF576671.21E-6109139No hitNo description
Gene3DG3DSA:3.30.160.601.3E-4109138IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.3E-11110135IPR007087Zinc finger, C2H2
SMARTSM003550.89111133IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.217111138IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MTLTRHEAEE SKEMEGLRAH AVALLSLSSS PESSAAASAG GGDSRAPAAS AASRRAMAAE  60
GVFECKTCSK RFPSFQALGG HRTSHTRLQA RMLSDAAGGA GAAERDRARV HECAVCGLEF  120
SMGQALGGHM RRHRGEAPQA AHDDGAAQPD HAMPDLNFPP LEDGGGGGGG QDQQRSGDHS  180
SEPQLLNLLV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG618800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9711161e-90EU971116.1 Zea mays clone 357761 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817787.11e-100zinc finger protein ZAT12-like
TrEMBLA0A2S3HQN81e-98A0A2S3HQN8_9POAL; Uncharacterized protein
TrEMBLA0A2T7DEP51e-98A0A2T7DEP5_9POAL; Uncharacterized protein
STRINGPavir.J14338.1.p1e-132(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.14e-21C2H2 family protein