PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG620100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WOX
Protein Properties Length: 319aa    MW: 33498.7 Da    PI: 9.2192
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG620100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.23.8e-203594357
                         --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         +R+++tkeq+ +Le l+e   r+ps+e++++++++l    +++ ++V++WFqN++a++++
  Pavir.5KG620100.1.p 35 SRWNPTKEQVAVLEGLYEHgLRTPSQEQIKQITARLlehgHIEGKNVFYWFQNHKARQRQ 94
                         7*****************99**************************************96 PP
2Wus_type_Homeobox110.78.1e-363496365
    Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                         ++RW+Pt+eQ+ +Le ly++GlrtP++e+i++ita+L e+G+ie+kNVfyWFQN+kaR+rqkq
  Pavir.5KG620100.1.p 34 NSRWNPTKEQVAVLEGLYEHGLRTPSQEQIKQITARLLEHGHIEGKNVFYWFQNHKARQRQKQ 96
                         79***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.6083095IPR001356Homeobox domain
SMARTSM003892.2E-43299IPR001356Homeobox domain
SuperFamilySSF466891.15E-1134102IPR009057Homeodomain-like
PfamPF000465.9E-183594IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-73594IPR009057Homeodomain-like
CDDcd000862.98E-63696No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEAPQQGGSA PGGAGAPLSP PLSPASAAAA ALANSRWNPT KEQVAVLEGL YEHGLRTPSQ  60
EQIKQITARL LEHGHIEGKN VFYWFQNHKA RQRQKQKQDS FAYFTRLLRR PPPLPVLVSP  120
PGPPPYPHGR FPVPAAPAMA TMAPPPPPAA AAACNTSTAG GTHVMYRASP FYMPPPQAPP  180
AGAAYYHTVQ EQQQQWPVMY PRMAVAQDKM IPAAAAQQHQ QPPSHPGAAA ASSAAPLHVV  240
HLPAADAGGP SRETLQLFPL QPTFLLPDKG RAAGTSASTA SASFSEESES PGSLDSNGNG  300
EAPAVPFYDF FGLQSGGR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG620100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4902351e-122AM490235.1 Zea mays mRNA for putative wuschel homeobox protein (wox2A gene).
GenBankBT0370091e-122BT037009.1 Zea mays full-length cDNA clone ZM_BFb0151I01 mRNA, complete cds.
GenBankEU9540621e-122EU954062.1 Zea mays clone 1453569 homeobox domain containing protein mRNA, complete cds.
GenBankKJ7283841e-122KJ728384.1 Zea mays clone pUT6667 HB transcription factor (HB94) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814413.11e-134WUSCHEL-related homeobox 5-like
SwissprotA2WWU77e-55WOX5_ORYSI; WUSCHEL-related homeobox 5
SwissprotQ8LR867e-55WOX5_ORYSJ; WUSCHEL-related homeobox 5
TrEMBLA0A2T7DEM51e-142A0A2T7DEM5_9POAL; Uncharacterized protein
STRINGPavir.Ea03339.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75093548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.14e-33WUSCHEL related homeobox 2