PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG627400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 591aa    MW: 63843.5 Da    PI: 7.7714
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG627400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.65.8e-103634001954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+  +++ LAk++gLt +qV++WF N R +
  Pavir.5KG627400.1.p 363 FEHflHPYPTDGDKQMLAKQTGLTRNQVSNWFINARVR 400
                          554458******************************88 PP
2BELL93.42.1e-30229298372
                 BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          +e q kk++L+s++eeV+krY+ y++q+qtvi+sFe+vag  +a+p++++Al+a+++hF+cLk +i +q+
  Pavir.5KG627400.1.p 229 AEQQWKKTRLISMMEEVCKRYRLYYQQVQTVINSFETVAGFSNAAPFAAMALRAMAKHFKCLKGMILSQL 298
                          5899**************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.9E-35159296IPR006563POX domain
PfamPF075262.4E-36164294IPR006563POX domain
PROSITE profilePS5007112.26341404IPR001356Homeobox domain
SMARTSM003891.5E-10344408IPR001356Homeobox domain
CDDcd000862.84E-13344405No hitNo description
SuperFamilySSF466894.28E-17346412IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-28347408IPR009057Homeodomain-like
PfamPF059206.2E-19361400IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MSSAAGGYGA EPHCHGHGHG DFLLHHHHAQ HVAAQQLYHV PQHSRREKLR FPQDDGSPPQ  60
HQQHAGAAWP PPPPGFYSYA SSSTSSYSPH SPTGLAQAQL VAAHAHGLAP PLASQIPTQN  120
FALSLSSSSS NPPPPPPPQQ QQPRRPLIGA PAGPFGPFTG YAAVLGRSRF LAPAEKLLEE  180
ICDVGGAAPH VDRTASDEAL LDADPMEGID HDMDGDDRAA SDAGPISGAE QQWKKTRLIS  240
MMEEVCKRYR LYYQQVQTVI NSFETVAGFS NAAPFAAMAL RAMAKHFKCL KGMILSQLRN  300
TSKAAAGKEG LSKDIAMFGL ASGSAAALQR ASSMAAFGQP HNIWRPQRGL PERAVSVLRS  360
WLFEHFLHPY PTDGDKQMLA KQTGLTRNQV SNWFINARVR LWKPMVEEIH NLEMRQVHKH  420
PALDKSQLSM HHQTQHSSES SRKPSDPSDS QLGQSSSITR NHGIPTSQGF PDELSQMSHS  480
IQQGQVTFAY NGLSTPQHQH SLASSQHHQQ VGSMSGIAGA GNGGVSLTLG LHQNNRVCIA  540
EPLPVSLPPN LAHRFGLEEV SDAYVMGSFG GQDRHFGKEI GGHLLHDFVG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A5e-16350408563Homeobox protein Meis2
3k2a_B5e-16350408563Homeobox protein Meis2
4xrm_A5e-16350408563Homeobox protein Meis2
4xrm_B5e-16350408563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.208170.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG627400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970574.10.0BEL1-like homeodomain protein 9
TrEMBLK3XFT40.0K3XFT4_SETIT; Uncharacterized protein
STRINGPavir.Ea03389.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.13e-59BEL1-like homeodomain 8