PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG633100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 577aa    MW: 62202.6 Da    PI: 8.5073
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG633100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.65.6e-103493861954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+  +++ LAk++gLt +qV++WF N R +
  Pavir.5KG633100.1.p 349 FEHflHPYPTDGDKQMLAKQTGLTRNQVSNWFINARVR 386
                          554458******************************88 PP
2BELL86.92.3e-28215284372
                 BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          +e q kk++L+s++eeV+krY+ y++q+qtvi+s e+vag  +a+p++++Al+a+++hF+cLk +i +q+
  Pavir.5KG633100.1.p 215 AEQQWKKTRLISMMEEVCKRYRLYYQQVQTVINSSETVAGFSNAAPFAAMALRAMAKHFKCLKGMILSQL 284
                          5899**************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.1E-35148282IPR006563POX domain
PfamPF075266.5E-34153280IPR006563POX domain
PROSITE profilePS5007112.26327390IPR001356Homeobox domain
CDDcd000862.79E-13330391No hitNo description
SMARTSM003891.5E-10330394IPR001356Homeobox domain
SuperFamilySSF466895.56E-17332398IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-28333394IPR009057Homeodomain-like
PfamPF059206.1E-19347386IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MSSAAGGYGG GTGSGAEPHC HGHGHGHGDF LLHHHAQHVA AAQQLYHVPQ HSRREKLRYP  60
QDDGSPPHAP APAPHQHWPP PPPPPGFYSY ASSSTSSYSP HSPKGLPHNF ALSLSSSSNP  120
PPPVPQQQQQ PRRPHPHGAP AGPFGPFTGY AAVLGRSRFL APAEKLLEEI CDVGRAAPHV  180
DRTASDEALL DADPMEGIDH DMDGAASDAG PISGAEQQWK KTRLISMMEE VCKRYRLYYQ  240
QVQTVINSSE TVAGFSNAAP FAAMALRAMA KHFKCLKGMI LSQLRNTSKA AAGKEGLSKD  300
IAMFGLASGS AAVLQRAGSV AAFGQPHNIW RPQRGLPERA VSVLRSWLFE HFLHPYPTDG  360
DKQMLAKQTG LTRNQVSNWF INARVRLWKP MVEEIHNLEM RQVQKHPALD KSQLSMHHQT  420
QHSSESSRKP SDPSDSQLGQ SSSITRNHGI PTSQGFPDEL SQMSHSIQQG QVTFAYNGLS  480
TPQHQHSLAS SQHHQQVGSM SGIGGAGNGG VSLTLGLHQN NRVCIAEPLP ASLPPNLAHR  540
FGLEEVSDAY VMGSFGGQDR HFGKAIGGHL LHDFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-16336394563Homeobox protein Meis2
3k2a_B4e-16336394563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.208170.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG633100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970574.10.0BEL1-like homeodomain protein 9
TrEMBLK3XFT40.0K3XFT4_SETIT; Uncharacterized protein
STRINGPavir.J04807.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.14e-63BEL1-like homeodomain 8