PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG640100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 199aa    MW: 21439.2 Da    PI: 9.6328
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG640100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.81.9e-32111169159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK vk+s +prsYYrC++++C+vkk+v+r a+d+++v++tYeg Hnh+
  Pavir.5KG640100.1.p 111 LDDGYRWRKYGQKAVKNSAYPRSYYRCSHHTCNVKKQVQRLARDTSIVVTTYEGVHNHP 169
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-3398169IPR003657WRKY domain
SuperFamilySSF1182901.24E-28103170IPR003657WRKY domain
PROSITE profilePS5081128.633106171IPR003657WRKY domain
SMARTSM007748.1E-38111170IPR003657WRKY domain
PfamPF031061.0E-25112169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MEDSLQGGSQ QKQPNPQLPA MLLASASPVP QLDWASLLLP RAPGSLHDVG ATASQQQAVA  60
GASGGCSSST AGDADGETGA GEKGGGTRGK KKKKATWPRF AFQTRSENDI LDDGYRWRKY  120
GQKAVKNSAY PRSYYRCSHH TCNVKKQVQR LARDTSIVVT TYEGVHNHPC EKLMEALSPI  180
LKQLQLLSQL QCSTNQLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-26101168774Probable WRKY transcription factor 4
2lex_A9e-26101168774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG640100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9580741e-118EU958074.1 Zea mays clone 1671428 WRKY23 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806667.11e-103probable WRKY transcription factor 48
SwissprotQ9FFS31e-55WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBLA0A2S3HAK71e-102A0A2S3HAK7_9POAL; Uncharacterized protein
STRINGPavir.J03879.1.p1e-146(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.11e-46WRKY DNA-binding protein 56