PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5KG647000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 198aa MW: 21496.2 Da PI: 8.0443

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5KG647000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	134.1	9.6e-42	6	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..........kvkaeekewyfFskrdkkyatgkrknratks 80 lppG+rF Pt+eel+++yL++k+++ + ++e+vi+ vd+y+v+P +Lp + ++e + w+fF++r++++a+g r++r+t s Pavir.5KG647000.1.p 6 LPPGYRFYPTEEELICFYLRNKLDSLRDDIERVIPVVDVYSVDPGQLPGihgmlcggggEGEGEGEPWFFFCPRQEREARGGRPSRTTPS 95 79**************************99************5578888876655557779******************* PP NAM 81 gyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 gyWka g+ v+s+ +++++g+kkt+vfy+gr p+g kt+W m+eyr+ Pavir.5KG647000.1.p 96 GYWKAAGTPGVVYSAdDRRAIGVKKTMVFYQGRVPSGAKTRWKMNEYRA 144 *********9977888*************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-45	3	149	IPR003441	NAC domain
PROSITE profile	PS51005	43.218	6	171	IPR003441	NAC domain
Pfam	PF02365	1.0E-24	7	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MAAAGLPPGY RFYPTEEELI CFYLRNKLDS LRDDIERVIP VVDVYSVDPG QLPGIHGMLC 60 GGGGEGEGEG EPWFFFCPRQ EREARGGRPS RTTPSGYWKA AGTPGVVYSA DDRRAIGVKK 120 TMVFYQGRVP SGAKTRWKMN EYRALQHYAA PDAGAGARAD GSSSSARAAA PPIRSPQVEE 180 RVQPVSTLHP IWNPEAV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-29	1	146	12	144	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-29	1	146	12	144	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-29	1	146	12	144	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-29	1	146	12	144	NO APICAL MERISTEM PROTEIN
4dul_A	1e-29	1	146	12	144	NAC domain-containing protein 19
4dul_B	1e-29	1	146	12	144	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5KG647000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK071274	1e-116	AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818071.1	3e-97	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	2e-56	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2S3HPP4	7e-96	A0A2S3HPP4_9POAL; Uncharacterized protein
STRING	Pavir.Ea03745.1.p	1e-125	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	3e-56	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Pavir.5KG647000.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]