PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG661900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 388aa    MW: 42439.8 Da    PI: 6.775
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG661900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.21.5e-06279300223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                           C +Cgk F+r  nL+ H+r H
  Pavir.5KG661900.1.p 279 FCLICGKGFKRDANLRMHMRGH 300
                          6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.68E-5276304No hitNo description
PROSITE profilePS5015711.552278305IPR007087Zinc finger, C2H2
SMARTSM003550.012278300IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.7E-5280304IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280280300IPR007087Zinc finger, C2H2
SMARTSM0035571327360IPR015880Zinc finger, C2H2-like
SMARTSM0035522365387IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MEGGMSSLET AMKASSSVAS GTARNADPDI QTVRSNSVEQ FYFPRPGQSL PGIPPFFGPP  60
SSSLYLPNDN EAKVGNQFEP NLSQSTDWDP QAIVSNLTFL EQKIKQVKDV VLSMSSRENQ  120
VAGGSCELAA KQQLITADLT NIIIQLITTA GSLLPSMKNP LSSNPAVRQL SNTLGSPMGF  180
GMNANQRPSV DSKNDIPDIG KASGYEELIN SLNTTQDERD DLIKCPNPCG GEGSEPTPME  240
DHDVKESDDG EHEGENLPPG SYVVLQLEKE EILAPHTHFC LICGKGFKRD ANLRMHMRGH  300
GDEYKTAAAL AKPTKDSGSD HAPVTRYSCP FVGCKRNKEH KKFQPLKTIL CVKNHYKRSH  360
CDKSYTCSRC NTKKFSVIAD LKTHEKHC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.69820.0callus| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG661900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1847340.0KF184734.1 Saccharum hybrid cultivar R570 clone BAC 170F15 complete sequence.
GenBankKF1849330.0KF184933.1 Saccharum hybrid cultivar R570 clone BAC 030N11 complete sequence.
GenBankKF1849410.0KF184941.1 Saccharum hybrid cultivar R570 clone BAC 189K21 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819567.10.0zinc finger protein STOP1 homolog
SwissprotQ943I60.0STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A3L6RHU50.0A0A3L6RHU5_PANMI; Uncharacterized protein
STRINGPavir.Ea03463.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-118C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]