PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG691500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 391aa    MW: 42736 Da    PI: 6.8733
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG691500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-05213232120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          + C+ C+k+F+r  n++ H+
  Pavir.5KG691500.1.p 213 FICQVCSKTFNRYNNMQMHM 232
                          89*****************9 PP
2zf-C2H212.20.00055299321123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C  Cgk+F  k + ++H +++
  Pavir.5KG691500.1.p 299 FGCRRCGKPFAVKGDWRTHEKNC 321
                          56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.36E-5209236No hitNo description
Gene3DG3DSA:3.30.160.606.1E-5213232IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.284213240IPR007087Zinc finger, C2H2
PROSITE patternPS000280215235IPR007087Zinc finger, C2H2
SuperFamilySSF576679.35E-5283319No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MVLRACAMEG AAGSFGVPYY EWLKPRSSSP PLPSSSSSTS STLSTPSIDH SAVVDGQERD  60
AMTCLPLLGR LEGRATTPDR GPNPVKQEEL VTSDITGTTG ARGEAAVGVV DLNIGLPAIG  120
GYSSEEAPMD EEDDEEEDFE EEEEDEKPRK CKEEEAGDQQ ANSTEMAVES VEGAEPEYPR  180
VDGDDGVRGF MDSRGRRYWI PTPAQILVGP VQFICQVCSK TFNRYNNMQM HMWGHGREYR  240
KGPESLKGTQ AATLALLKLP CYCCAPGCRN GVAHPRARPL KDFRTLQTHY KRKHGDKRFG  300
CRRCGKPFAV KGDWRTHEKN CGKRWFCACG SDFKHKRSLN DHVRSFGGGH LPVALDQAAA  360
AAVPPIKPKE RIIRFGQAAA PWNGAHAAQA *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.50040.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG691500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1026580.0AK102658.1 Oryza sativa Japonica Group cDNA clone:J033101H19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804775.10.0protein TRANSPARENT TESTA 1-like
TrEMBLA0A3L6RFA60.0A0A3L6RFA6_PANMI; Protein TRANSPARENT TESTA 1-like
STRINGPavir.J11927.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44723667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.11e-95WIP domain protein 5