PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5KG699600.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 262aa MW: 28804.3 Da PI: 7.8555

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5KG699600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.7	1.7e-12	195	239	6	54
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++Er RR ri +++ +L++l+P+ +k + +++L +AveYIk+L Pavir.5KG699600.2.p 195 SIAERERRTRISKRLKKLQDLVPNM----DKQTNTSDMLDLAVEYIKEL 239 689*******************7....688*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.697	189	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-15	192	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.52E-13	193	244	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.5E-15	194	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.6E-13	195	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.9E-10	195	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MSCWLSTHAW IAGSWSDRRT QRFPHAELML FPFLMHAGMA PASGMGSYSQ AGTDAAMAHG 60 HRQLSSQWSF SRQDLPRISE MGMIPADIGE SIVAGGGCNS SSDGAAQSSS YLSRNFSVSS 120 WDDTNSIMFS SSPNKKPKLD AADDMVTSFS NIDSQFGLSK SSLEMPGMDD YLQLQQDSVA 180 CRVRAKRGCA THPRSIAERE RRTRISKRLK KLQDLVPNMD KQTNTSDMLD LAVEYIKELK 240 GQVEKLKHDQ ANCFCSGNQN S*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.9434	0.0	callus\| leaf\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5KG699600.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU970333	0.0	EU970333.1 Zea mays clone 343433 mRNA sequence.
GenBank	EU972851	0.0	EU972851.1 Zea mays clone 389073 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814593.1	1e-149	transcription factor bHLH128-like
Swissprot	Q8H102	1e-48	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A2S3HP78	1e-147	A0A2S3HP78_9POAL; Uncharacterized protein
STRING	Pavir.J01306.1.p	1e-147	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	3e-48	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pavir.5KG699600.2.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]