PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG707800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 232aa    MW: 24816 Da    PI: 5.2221
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG707800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.5e-05204227123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          y+C+ C+k+F+++  L +H ++ H
  Pavir.5KG707800.1.p 204 YSCKSCSKTFNSSVGLDTHCKLkH 227
                          99******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.783204231IPR007087Zinc finger, C2H2
PROSITE patternPS000280206227IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MHTSKNSNIS AIGFKFREGK RKSYSYTSTD EDDDSDEEVP LAIPLYPNAD DDKSKETKSG  60
VEKPVATQLC KPNNILEETK DPEKLKADVG GTGDDDSDGN AVDSAEGESG DDEDSSDEDD  120
SESSDEVDGE ASKHATGKIR PAETPLRTPV NKKAKIATPS MGNKTGTGST KRSGYVHVAT  180
LYPSSKQVKK IPSIIDNSKR ATGYSCKSCS KTFNSSVGLD THCKLKHNAH H*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG707800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682481.15e-83uncharacterized protein LOC101777617
TrEMBLA0A3L6SKL81e-112A0A3L6SKL8_PANMI; Uncharacterized protein
STRINGPavir.J07493.1.p1e-165(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111732022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.11e-07histone deacetylase 2C