PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5KG710000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 703aa MW: 74230.5 Da PI: 6.5716

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5KG710000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	61.2	1.7e-19	533	629	2	95
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 +kvl++sdv+++gr+vlpkk ae h ++k++ ++ + +ed ++r+W++++++ ++ks++y+l+ ++ eFv++n+L+egDf+v++ + Pavir.5KG710000.1.p 533 QKVLKQSDVGSLGRIVLPKKEAEVHlpELKTRDGISIPMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGEFVRSNELQEGDFIVIY--S 619 79***********************999*******7778***99777777777777.******************..5 PP S.SEE..EEE CS B3 87 r.sefelvvk 95 + ++++++++ Pavir.5KG710000.1.p 620 DvKSGKYLIR 629 5588877776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.3E-27	526	637	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10015	1.00E-31	530	631	No hit	No description
SuperFamily	SSF101936	3.14E-22	531	627	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.532	532	634	IPR003340	B3 DNA binding domain
SMART	SM01019	1.3E-18	532	634	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.2E-16	533	628	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009657	Biological Process	plastid organization
GO:0009733	Biological Process	response to auxin
GO:0009737	Biological Process	response to abscisic acid
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0031930	Biological Process	mitochondria-nucleus signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0001076	Molecular Function	transcription factor activity, RNA polymerase II transcription factor binding
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence Send to blast
MDASAVSSPP HSQENPPEHG GALGEAPAEE IGGEAADDFL FAEDTFPSLP DFPCLSSPSS 60 STFSSSSSSN SSCAYTNAAG GAGGGGADGA AGDRSVPASA GEGFDALDDI DQLLDFASLS 120 MPWDSEPTFP EVSMMLEDAM FAPPHPVGDG TREGKAVLEG TGGEEACMDA GAAGEDLPRF 180 FMEWLTSNRE NISAEDLRSI RLRRSTIEAA AARLGGGRQG TMQLLKLILT WVQNHHLQRK 240 RPRDALEEAA GLHGHGHSQL SSPGGNPGYE FPAGVQDMTA GGGTSWMPYQ QPFTPPACGG 300 DAVYQSAAGQ YPFHQSSSTS SVVVSSQPFS PPAVGDMHAA GGGNMAWTQP YVPYPGASMG 360 SYPLPPVVPQ PFSSGFGGQY AGAGHPMAPQ RMAAVEASAT KEARKKRMAR QRRLSCLQQQ 420 RSQQLNLGQI QVPVLQQEPS ARSTNSAPVT PAAGGWGFWS PGSPQQVQNA LPKSNSSRAP 480 MQQVPRSPES APPPPPPAKP APGARQEESP QRSMAADKRQ GAKTDKNLRY LLQKVLKQSD 540 VGSLGRIVLP KKEAEVHLPE LKTRDGISIP MEDIGTSRVW NMRYRFWPNN KSRMYLLENT 600 GEFVRSNELQ EGDFIVIYSD VKSGKYLIRG VKVRPAQEQQ GNGSSSLGKH KHGYPGPEKA 660 GGAPDDGGAD GTNKPDGGCK GRSPQGVRRA RHQGAASMAV SI*

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence Send to blast

MDASAVSSPP HSQENPPEHG GALGEAPAEE IGGEAADDFL FAEDTFPSLP DFPCLSSPSS  60
STFSSSSSSN SSCAYTNAAG GAGGGGADGA AGDRSVPASA GEGFDALDDI DQLLDFASLS  120
MPWDSEPTFP EVSMMLEDAM FAPPHPVGDG TREGKAVLEG TGGEEACMDA GAAGEDLPRF  180
FMEWLTSNRE NISAEDLRSI RLRRSTIEAA AARLGGGRQG TMQLLKLILT WVQNHHLQRK  240
RPRDALEEAA GLHGHGHSQL SSPGGNPGYE FPAGVQDMTA GGGTSWMPYQ QPFTPPACGG  300
DAVYQSAAGQ YPFHQSSSTS SVVVSSQPFS PPAVGDMHAA GGGNMAWTQP YVPYPGASMG  360
SYPLPPVVPQ PFSSGFGGQY AGAGHPMAPQ RMAAVEASAT KEARKKRMAR QRRLSCLQQQ  420
RSQQLNLGQI QVPVLQQEPS ARSTNSAPVT PAAGGWGFWS PGSPQQVQNA LPKSNSSRAP  480
MQQVPRSPES APPPPPPAKP APGARQEESP QRSMAADKRQ GAKTDKNLRY LLQKVLKQSD  540
VGSLGRIVLP KKEAEVHLPE LKTRDGISIP MEDIGTSRVW NMRYRFWPNN KSRMYLLENT  600
GEFVRSNELQ EGDFIVIYSD VKSGKYLIRG VKVRPAQEQQ GNGSSSLGKH KHGYPGPEKA  660
GGAPDDGGAD GTNKPDGGCK GRSPQGVRRA RHQGAASMAV SI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9b_A	6e-37	528	638	1	111	B3 domain-containing transcription factor FUS3
6j9b_D	6e-37	528	638	1	111	B3 domain-containing transcription factor FUS3
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.4716	0.0	callus

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Between 10 and 30 days after pollination.
Uniprot	TISSUE SPECIFICITY: Seed.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator specifically required for expression of the maturation program in the seed development. Probably potentiates the response to the seed-specific hormone abscisic acid (ABA). May bind to DNA indirectly.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00083	PBM	Transfer from AT3G24650	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5KG710000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT060994	0.0	BT060994.1 Zea mays full-length cDNA clone ZM_BFb0082K18 mRNA, complete cds.
GenBank	JX469991	0.0	JX469991.1 Zea mays subsp. mays clone UT3351 ABI3VP1-type transcription factor mRNA, partial cds.
GenBank	MZEREGPRO	0.0	M60214.1 Zea mays viviparous-1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025816909.1	0.0	regulatory protein viviparous-1
Swissprot	P26307	0.0	VIV1_MAIZE; Regulatory protein viviparous-1
TrEMBL	A0A2T8IIY4	0.0	A0A2T8IIY4_9POAL; Uncharacterized protein
STRING	Pavir.Ea03476.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7529	34	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24650.1	8e-67	B3 family protein

Link Out ? help Back to Top
Phytozome	Pavir.5KG710000.1.p

Publications ? help Back to Top
Williamson JD,Scandalios JG Differential response of maize catalases to abscisic acid: Vp1 transcriptional activator is not required for abscisic acid-regulated Cat1 expression. Proc. Natl. Acad. Sci. U.S.A., 1992. 89(18): p. 8842-6 [PMID:1388272] Hoecker U,Vasil IK,McCarty DR Integrated control of seed maturation and germination programs by activator and repressor functions of Viviparous-1 of maize. Genes Dev., 1995. 9(20): p. 2459-69 [PMID:7590227]