PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG710000.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 702aa    MW: 74102.4 Da    PI: 6.4643
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG710000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.79.1e-18533628295
                          EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          +kvl++sdv+++gr+vlpk+  e h  ++k++ ++ + +ed  ++r+W++++++  ++ks++y+l+ ++ eFv++n+L+egDf+v++  +
  Pavir.5KG710000.2.p 533 QKVLKQSDVGSLGRIVLPKEA-EVHlpELKTRDGISIPMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGEFVRSNELQEGDFIVIY--S 618
                          79****************996.6777*999***********7778*******99777777777777.********************..5 PP

                          S.SEE..EEE CS
                   B3  87 r.sefelvvk 95 
                          + ++++++++
  Pavir.5KG710000.2.p 619 DvKSGKYLIR 628
                          5588877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.7E-25526636IPR015300DNA-binding pseudobarrel domain
CDDcd100159.49E-30530630No hitNo description
SuperFamilySSF1019361.57E-19531626IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.4E-15532633IPR003340B3 DNA binding domain
PROSITE profilePS5086310.334532633IPR003340B3 DNA binding domain
PfamPF023627.2E-15533627IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MDASAVSSPP HSQENPPEHG GALGEAPAEE IGGEAADDFL FAEDTFPSLP DFPCLSSPSS  60
STFSSSSSSN SSCAYTNAAG GAGGGGADGA AGDRSVPASA GEGFDALDDI DQLLDFASLS  120
MPWDSEPTFP EVSMMLEDAM FAPPHPVGDG TREGKAVLEG TGGEEACMDA GAAGEDLPRF  180
FMEWLTSNRE NISAEDLRSI RLRRSTIEAA AARLGGGRQG TMQLLKLILT WVQNHHLQRK  240
RPRDALEEAA GLHGHGHSQL SSPGGNPGYE FPAGVQDMTA GGGTSWMPYQ QPFTPPACGG  300
DAVYQSAAGQ YPFHQSSSTS SVVVSSQPFS PPAVGDMHAA GGGNMAWTQP YVPYPGASMG  360
SYPLPPVVPQ PFSSGFGGQY AGAGHPMAPQ RMAAVEASAT KEARKKRMAR QRRLSCLQQQ  420
RSQQLNLGQI QVPVLQQEPS ARSTNSAPVT PAAGGWGFWS PGSPQQVQNA LPKSNSSRAP  480
MQQVPRSPES APPPPPPAKP APGARQEESP QRSMAADKRQ GAKTDKNLRY LLQKVLKQSD  540
VGSLGRIVLP KEAEVHLPEL KTRDGISIPM EDIGTSRVWN MRYRFWPNNK SRMYLLENTG  600
EFVRSNELQE GDFIVIYSDV KSGKYLIRGV KVRPAQEQQG NGSSSLGKHK HGYPGPEKAG  660
GAPDDGGADG TNKPDGGCKG RSPQGVRRAR HQGAASMAVS I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A7e-355286371111B3 domain-containing transcription factor FUS3
6j9b_D7e-355286371111B3 domain-containing transcription factor FUS3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.47160.0callus
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Between 10 and 30 days after pollination.
UniprotTISSUE SPECIFICITY: Seed.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator specifically required for expression of the maturation program in the seed development. Probably potentiates the response to the seed-specific hormone abscisic acid (ABA). May bind to DNA indirectly.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG710000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0609940.0BT060994.1 Zea mays full-length cDNA clone ZM_BFb0082K18 mRNA, complete cds.
GenBankJX4699910.0JX469991.1 Zea mays subsp. mays clone UT3351 ABI3VP1-type transcription factor mRNA, partial cds.
GenBankMZEREGPRO0.0M60214.1 Zea mays viviparous-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816909.10.0regulatory protein viviparous-1
SwissprotP263070.0VIV1_MAIZE; Regulatory protein viviparous-1
TrEMBLA0A2T8IJ230.0A0A2T8IJ23_9POAL; Uncharacterized protein
STRINGPavir.Ea03476.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.12e-64B3 family protein
Publications ? help Back to Top
  1. Williamson JD,Scandalios JG
    Differential response of maize catalases to abscisic acid: Vp1 transcriptional activator is not required for abscisic acid-regulated Cat1 expression.
    Proc. Natl. Acad. Sci. U.S.A., 1992. 89(18): p. 8842-6
    [PMID:1388272]
  2. Hoecker U,Vasil IK,McCarty DR
    Integrated control of seed maturation and germination programs by activator and repressor functions of Viviparous-1 of maize.
    Genes Dev., 1995. 9(20): p. 2459-69
    [PMID:7590227]