PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG723900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 416aa    MW: 44518.6 Da    PI: 4.7182
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG723900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.87.6e-151452644
                         HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
               SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                            r  tf  R+ng+ KKA+ELSvLC+++vav+ +++ g
  Pavir.5KG723900.1.p 14 APSRARTFKSRKNGLKKKAHELSVLCGVDVAVVCAGPGG 52
                         556888****************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.395152IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-20180IPR002100Transcription factor, MADS-box
SMARTSM004327.7E-17160IPR002100Transcription factor, MADS-box
CDDcd002662.98E-25380No hitNo description
PRINTSPR004047.8E-7323IPR002100Transcription factor, MADS-box
PfamPF003192.2E-141152IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MPRRKIEMAL IDKAPSRART FKSRKNGLKK KAHELSVLCG VDVAVVCAGP GGGAPAVWEF  60
GSPGVIGRYR RLPADKRAKH THLNYLNAEL AKVRKDEAKL AKERQEGPNK LASPSAALLK  120
GMDLEELLGS IDAALLATAQ RRKALGMPDD GQLGQGAPLV GDGLDGDMEA WIDELTWHGV  180
DQNPLDASMT MQPAASGVQY INGGSLADMG GNQCLQQMGG NGENDHGQQP WDTNQLHNTV  240
SCPDYCSYSD MAGCPRMPVV PSNAIAYDGC WFDQATWGTD ESHRDAVVPA EYYHPALDIT  300
CNPVYMPSEH SGMGVPAIGL DGGFMDASGH GYGTQCLADY FQWPDATQQY GDEPLHYLSD  360
VADGVLSCSS GTSELFAQCR SSSGALQFSS EQSQSDDARD QDSGVQKFLV VQGFN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG723900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2T7DCL90.0A0A2T7DCL9_9POAL; Uncharacterized protein
STRINGPavir.J13519.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.13e-08AGAMOUS-like 6