PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG728100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 877aa    MW: 99346.2 Da    PI: 7.1032
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG728100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR143.69.7e-14333423190
                 FAR1   1 kfYneYAkevGFsvrkskskks.........krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkl 81 
                          ++Yn Y+ e+GF +r  k++ s         +++     ++f+Cs+ g++e + k+        ++ +t+C+a+l++++++d+ w v + 
  Pavir.5KG728100.1.p 333 EYYNLYSWECGFGIRWGKKRWSerkrkrqspETKPYQLAQDFYCSCRGHPEANVKT--------SSAKTNCRAMLRLHRTSDHGWIVVEH 414
                          69************988877665554433333333456789*********999888........899*********************** PP

                 FAR1  82 eleHnHela 90 
                          + +HnH+l+
  Pavir.5KG728100.1.p 415 VADHNHPLS 423
                          *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.2E-11333423IPR004330FAR1 DNA binding domain
PfamPF105512.9E-29545638IPR018289MULE transposase domain
PROSITE profilePS5096610.262829865IPR007527Zinc finger, SWIM-type
PfamPF044341.2E-5829862IPR007527Zinc finger, SWIM-type
SMARTSM005752.3E-4840867IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 877 aa     Download sequence    Send to blast
MSTGGLANGD GSYWSEAAGA KYSKWAPRIA RDSSGSPSPC IASSGNLPHL GIEAEPHATS  60
SVEKSSSSAA NFWSQGCLVE NELEWVESML KEDSTRTTLL MGSGAIDLNV SCGSEQGGVS  120
DGLDLQGHIS NSKVVPSTTE GRGIWMPMEI CSTTKKSCRL TDGRSRQSTS AAASKMLDLN  180
TEYAKSGFTT YCNENETEVQ GTRDIVHTDG YSSAHNAITS VQSSNCQLEY VGIDIDLNVE  240
QAYNDLPHIE SGTTICLDAT KLAHGGSLVV SGTQNVGWKR RNTTFEGPDY RDPLPGKPSA  300
LQQALMKFAD RTSDYIINPA VGTEFDNCEE AFEYYNLYSW ECGFGIRWGK KRWSERKRKR  360
QSPETKPYQL AQDFYCSCRG HPEANVKTSS AKTNCRAMLR LHRTSDHGWI VVEHVADHNH  420
PLSQCYGEKK QWPSHHHLDK FSKDLVRMLR ENNIGITKLY SILGTFFGSM QNVPATKRCL  480
KTVCHKINRE QADDDIKKTL DLVRELRESD PGFMFSVDTD EDGRIKTLLW TNSRSRMQYE  540
HFGDVVSFDT TFKTNLYDMP FGLFVGVNNH FQTVLLGGVL TTDEKVDTFK WVFKEFASLM  600
GGHTPKVILT DQCRAMEVAI AEEWPDTVHR WCKWHVLKRV KECVGTKYTS NKEFRDKFHL  660
MLNEMLTIEE FESSWAQLLK DYGLTNNAFL NQIYATRHKW VKSYFKGVFC ARMTSTQRSE  720
SANMMLKNIV APNCPLHQFI QQYMKMQYIR DEDENYEERR NKLNSKKVCT GGPLVLHAHN  780
IYTLKVFGLF SQLKEESEFY RAMEVIPGEE YIAEHYDLSR VQRWCKGRYK VQVTDGAQNY  840
KCECGLFEHF GLPCSHILRV LITNGMQKIP DSLIMQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG728100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPavir.J00904.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-67FAR1-related sequence 5