PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5KG733400.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 571aa MW: 63033.3 Da PI: 4.5753

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5KG733400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37.1	5.5e-12	4	77	18	97
--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 18 lpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +p +fa+++ ++ + + led g +W+v+l + ++g ++ GWk+Fv ++ + g+f+vF+ + rs f +v++f Pavir.5KG733400.2.p 4 IPPPFARTIlDLA--G-SNIYLEDAFGLRWRVRL--CLRDGVLSFGHGWKNFVLDHAISCGEFLVFRQIARSVF--TVQMF 77 9***9996333..3.37***********..88999999*********************9888888..77766 PP
2	B3	32.8	1.2e-10	501	565	29	95
-..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 kk++ k ++l+d+ r W v + + +++ + +GW + +++n+L+egD++ F+l+g+se ++ v+ Pavir.5KG733400.2.p 501 KKQGRKVVILKDPCTRLWPVLY--QCTPRFSGFITGWVDICRENNLQEGDTCEFELSGNSELSFQVR 565 455667899***********..55665555667********************9998877666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	13.437	1	80	IPR003340	B3 DNA binding domain
SMART	SM01019	2.6E-5	1	80	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	4.7E-15	3	80	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.22E-12	4	77	No hit	No description
Pfam	PF02362	4.7E-9	4	77	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	7.06E-17	4	80	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.503	473	568	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0029	476	568	IPR003340	B3 DNA binding domain
CDD	cd10017	1.63E-11	487	565	No hit	No description
SuperFamily	SSF101936	1.24E-14	488	568	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.5E-8	501	565	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.2E-12	501	566	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 571 aa Download sequence Send to blast
MQDIPPPFAR TILDLAGSNI YLEDAFGLRW RVRLCLRDGV LSFGHGWKNF VLDHAISCGE 60 FLVFRQIARS VFTVQMFAPS AVERLFLCET NKRQSRKRKP RQKTICPSSQ TVKISKNCKK 120 KQRTDHHNNL GPKDCQMPDH VFIDDSDFPH SASELKCSEA SGGVPEVRVT EPQEDSEAPT 180 TTTTRHDCKA QEVLDGEAEI ADDCTVFEEK ESECNERAMQ HLVSDATEIE NVDGLNLPTN 240 TDAIGPLAMM DLNEVNIDDI FLSADIYEFE NDICTPEAFS VDLNMGGPIT IAQNSGFSCL 300 EDTQQNHFSS TGDDQRFVMP ETLSCTENKE MTDAVVTGSV CTDACVAVHD IDINALPANE 360 PSSFAKENSS PPADPEVHSS ECVLSGCKKD TDLLSCKDSQ AEHKEVKHDK QQDGQGNKQD 420 STGQNSAEVI SSSTKLHEHP HLCQNLHQTE NNSEGIGSGT SESGGVLALS ASTSKFCIAV 480 PEPEQTWLEL PTRLPVIPRT KKQGRKVVIL KDPCTRLWPV LYQCTPRFSG FITGWVDICR 540 ENNLQEGDTC EFELSGNSEL SFQVRVPSLQ *

Sequence ? help Back to Top

Protein Sequence Length: 571 aa Download sequence Send to blast

MQDIPPPFAR TILDLAGSNI YLEDAFGLRW RVRLCLRDGV LSFGHGWKNF VLDHAISCGE  60
FLVFRQIARS VFTVQMFAPS AVERLFLCET NKRQSRKRKP RQKTICPSSQ TVKISKNCKK  120
KQRTDHHNNL GPKDCQMPDH VFIDDSDFPH SASELKCSEA SGGVPEVRVT EPQEDSEAPT  180
TTTTRHDCKA QEVLDGEAEI ADDCTVFEEK ESECNERAMQ HLVSDATEIE NVDGLNLPTN  240
TDAIGPLAMM DLNEVNIDDI FLSADIYEFE NDICTPEAFS VDLNMGGPIT IAQNSGFSCL  300
EDTQQNHFSS TGDDQRFVMP ETLSCTENKE MTDAVVTGSV CTDACVAVHD IDINALPANE  360
PSSFAKENSS PPADPEVHSS ECVLSGCKKD TDLLSCKDSQ AEHKEVKHDK QQDGQGNKQD  420
STGQNSAEVI SSSTKLHEHP HLCQNLHQTE NNSEGIGSGT SESGGVLALS ASTSKFCIAV  480
PEPEQTWLEL PTRLPVIPRT KKQGRKVVIL KDPCTRLWPV LYQCTPRFSG FITGWVDICR  540
ENNLQEGDTC EFELSGNSEL SFQVRVPSLQ *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.16374	0.0	stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5KG733400.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815832.1	0.0	B3 domain-containing protein Os01g0905400-like
Swissprot	Q5N6V0	1e-167	Y1054_ORYSJ; B3 domain-containing protein Os01g0905400
TrEMBL	A0A3L6RFD7	0.0	A0A3L6RFD7_PANMI; B3 domain-containing protein
STRING	Pavir.Ea03523.1.p	0.0	(Panicum virgatum)

Link Out ? help Back to Top
Phytozome	Pavir.5KG733400.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]