PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG741400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CAMTA
Protein Properties Length: 858aa    MW: 95753.8 Da    PI: 7.6134
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG741400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1169.84.1e-53161285117
                 CG-1   5 kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                          k+rwlk++e+++iL n+e ++++++++++p+sgs++L+nr+++ryfr+DG++w+kkk+gkt++E+he+LKv++v++l+cyYa++++nptf
  Pavir.5KG741400.1.p  16 KTRWLKSQEVLQILLNHELFTVSHKPPQKPPSGSWFLFNRRVLRYFRNDGFEWQKKKNGKTINEAHERLKVDNVDALNCYYARGDKNPTF 105
                          89**************************************************************************************** PP

                 CG-1  95 qrrcywlLeeelekivlvhylev 117
                          qrr+yw+L+ ++e+ivlvhy++v
  Pavir.5KG741400.1.p 106 QRRIYWMLDPAYEHIVLVHYRDV 128
                          ********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143773.9788134IPR005559CG-1 DNA-binding domain
SMARTSM010762.3E-6411129IPR005559CG-1 DNA-binding domain
PfamPF038593.5E-4816128IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.103.2E-5311396IPR013783Immunoglobulin-like fold
SuperFamilySSF812962.8E-10311394IPR014756Immunoglobulin E-set
SuperFamilySSF484035.29E-14460610IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.804516581IPR020683Ankyrin repeat-containing domain
SMARTSM002483200516545IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.205.5E-14516613IPR020683Ankyrin repeat-containing domain
PfamPF136376.1E-10518570No hitNo description
CDDcd002044.31E-11518608No hitNo description
PROSITE profilePS5008810.579549581IPR002110Ankyrin repeat
SMARTSM002482.6E-4549578IPR002110Ankyrin repeat
SuperFamilySSF525403.19E-8672763IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.012712734IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.327713742IPR000048IQ motif, EF-hand binding site
PfamPF006120.014714733IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0017735757IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.578736764IPR000048IQ motif, EF-hand binding site
PfamPF006120.002737757IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 858 aa     Download sequence    Send to blast
MQQQGLDIHK LQQVVKTRWL KSQEVLQILL NHELFTVSHK PPQKPPSGSW FLFNRRVLRY  60
FRNDGFEWQK KKNGKTINEA HERLKVDNVD ALNCYYARGD KNPTFQRRIY WMLDPAYEHI  120
VLVHYRDVLE GSISVSARND SSTSNQNGSA SRAEVHSSPG WTSELVLPCP NSSSPGSAEE  180
VSSRTVIINN ETNSISGSDW IQHKAALRKL EMQLSLEDKE DSYVVAEEVP TNNEHVIFPG  240
IQIVEPDSSA NFEDIFNVLD FSGDHTKETG NNPCPSAIDV LKNSDTWLEE DQLEAILHPA  300
SMAPTEKQWF NIHEVSPESA FSSEITKVIV LGDFICNPSH SSLEMLFGDV KVPVEIIQQG  360
AIRCHTPCLN AGKVTMCLID GNGKPCSDAR EFEFHEKPTK SMIDGNEKAC NEAQDIKVHK  420
IPTKSNDELL LLLKYVQILF DGHGCDIFSN FSPQLPNPGC GLLVNQMDIM RKTYEHLDPE  480
KTVNSVMEVL LNDKFKQWLS SKCEQNSDGD HLLPKQYHSV IHTIAALGYD LALKPLLSSG  540
VPINYRDANG WTALHWAARF GREDMVVALL TAGAVAGALS HPTSEDPAAK TPASIALAFG  600
FKGLSAFLSE AQLTTHLDSI ESKENGKCEG KASGAGIRSA VDRISDKSTH VRGGTNDQLA  660
LKDSLGAVRN AVQAAARIQA AYRVFSFKKK KETALQNSCL SVHETVAVSH GMLEKAALSI  720
QKNFRCWKKR KEFLKLRKNV IKIQARVRAH QERKKYKELI RSVGVLEKVM LRWYRKGVGL  780
RGFNSGAMPV DEEVEEDVAK VFRKLRVETA IDEAVSRVSC IIGSPKAMQQ YRRMLQRYQQ  840
AKVNIAKDAS EVPTSEG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.123890.0callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG741400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816190.10.0calmodulin-binding transcription activator 4-like isoform X1
TrEMBLA0A3L6SKI10.0A0A3L6SKI1_PANMI; Calmodulin-binding transcription activator 4-like
STRINGPavir.Ea03904.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94073440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-101Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains