PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG744500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 260aa    MW: 27430.6 Da    PI: 8.1715
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG744500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.58e-34221561128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL..pk....kvkaeekewyfFskrdkkya.tgkrknratksgyW 83 
                          lp GfrF+Ptd+el+ +yL++k+ + +l++  +i+++d+ +++PwdL  p      ++  + e +fF++ +++   +g  + ra+ +g+W
  Pavir.5KG744500.1.p  22 LPIGFRFRPTDDELLLHYLRRKALACPLPA-GIISDADLARLHPWDLlpPVpaggGAADADGERFFFHRPATRCWrKGGGAARAAGAGVW 110
                          699***************************.99**************642355553333455888988877766527999********** PP

                  NAM  84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          + +gk+k v+s   ++ vg+k+tLvf +gra+ + +tdW mheyrl
  Pavir.5KG744500.1.p 111 RPSGKEKLVVSPrCKRPVGTKRTLVFCRGRARGAARTDWAMHEYRL 156
                          **********9877889***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-4415194IPR003441NAC domain
PROSITE profilePS5100542.85822195IPR003441NAC domain
PfamPF023651.9E-2023156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEGRPGGAWR VQGPAGAPVA GLPIGFRFRP TDDELLLHYL RRKALACPLP AGIISDADLA  60
RLHPWDLLPP VPAGGGAADA DGERFFFHRP ATRCWRKGGG AARAAGAGVW RPSGKEKLVV  120
SPRCKRPVGT KRTLVFCRGR ARGAARTDWA MHEYRLLPAG LHPFHGCAAS GSPTAAHVSC  180
NGAAADWVVC RIFKRTKPAV HRGRDDDDVD AEERPSSPSS ASSCVTDTSE TGDQEHDDDE  240
ESSSSSSNGE GSSCSVASN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-272119514168Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.43980.0leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG744500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9699701e-138EU969970.1 Zea mays clone 337945 NAC domain-containing protein 68 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817662.11e-138NAC domain-containing protein 83-like isoform X1
TrEMBLA0A2T7DC991e-139A0A2T7DC99_9POAL; Uncharacterized protein
STRINGPavir.Ea03888.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82333047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.23e-32NAC domain containing protein 47