PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG744500.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 259aa    MW: 27359.5 Da    PI: 8.1715
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG744500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.76.9e-34221551128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL..pk...kvkaeekewyfFskrdkkya.tgkrknratksgyWk 84 
                          lp GfrF+Ptd+el+ +yL++k+ + +l++  +i+++d+ +++PwdL  p     ++  + e +fF++ +++   +g  + ra+ +g+W+
  Pavir.5KG744500.2.p  22 LPIGFRFRPTDDELLLHYLRRKALACPLPA-GIISDADLARLHPWDLlpPVpggGAADADGERFFFHRPATRCWrKGGGAARAAGAGVWR 110
                          699***************************.99**************64235553334555888888877666527999*********** PP

                  NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           +gk+k v+s   ++ vg+k+tLvf +gra+ + +tdW mheyrl
  Pavir.5KG744500.2.p 111 PSGKEKLVVSPrCKRPVGTKRTLVFCRGRARGAARTDWAMHEYRL 155
                          *********9877889***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-4415193IPR003441NAC domain
PROSITE profilePS5100542.85822194IPR003441NAC domain
PfamPF023651.7E-2023155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEGRPGGAWR VQGPAGAPVA GLPIGFRFRP TDDELLLHYL RRKALACPLP AGIISDADLA  60
RLHPWDLLPP VPGGGAADAD GERFFFHRPA TRCWRKGGGA ARAAGAGVWR PSGKEKLVVS  120
PRCKRPVGTK RTLVFCRGRA RGAARTDWAM HEYRLLPAGL HPFHGCAASG SPTAAHVSCN  180
GAAADWVVCR IFKRTKPAVH RGRDDDDVDA EERPSSPSSA SSCVTDTSET GDQEHDDDEE  240
SSSSSSNGEG SSCSVASN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-272119414168Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.43980.0leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG744500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9699701e-133EU969970.1 Zea mays clone 337945 NAC domain-containing protein 68 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817662.11e-138NAC domain-containing protein 83-like isoform X1
TrEMBLA0A2T7DC991e-139A0A2T7DC99_9POAL; Uncharacterized protein
STRINGPavir.Ea03888.1.p1e-145(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.26e-30NAC domain containing protein 47