PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5KG752400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

HB-other

Protein Properties

Length: 1173aa MW: 128472 Da PI: 8.3981

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5KG752400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	18.2	4.4e-06	74	130	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ +++lF+ + ++ ++e +e++ +g+t +qV+ +F +R + +k Pavir.5KG752400.1.p 74 KRPRDLLNPKAVKCMQSLFALKDTIGKKETREISLLCGVTVTQVREFFTSQRSRVRK 130 799**************************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	8.811	71	131	IPR001356	Homeobox domain
SMART	SM00389	0.0058	73	135	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.84E-6	73	133	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-4	74	130	IPR009057	Homeodomain-like
CDD	cd00086	0.00157	74	130	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1173 aa Download sequence Send to blast
MELVPFKPAA GALVEAGSGA GAGSIPAMVA AQQQMLHEQA DQLQRLVVAQ CRLTGVNPLA 60 QEMAAGALSI KIGKRPRDLL NPKAVKCMQS LFALKDTIGK KETREISLLC GVTVTQVREF 120 FTSQRSRVRK FVQLSREKAL RVEASKEHDN VCSISTEQIP LDIEAHAEVI EPLRTLEPVV 180 PQSSSQPMGV PQVSSQPMGL PQGLLQPMEV FQNSLQQATA QQNFAAPVMP SGTMGVQPTD 240 AKISSDSVQK EIKQEEVHPG VESEDKKFLE SIFALMRKEE TFSGQVKLLE WILQINNVTV 300 LSWFVTMGGL TIMSTWLSLA AIEEQTSVIL VIFKVLLHLP LHKALPAHMS VVLQTINRLR 360 FYRTQDISSR ARNLLSRLSK VLVRSQALKK PQKELICKQR ISEILRDESW KSEVDITEEI 420 LALTDGANES SKPEPRKTPM LLTAAADETN KRSATQTKSK QKRKVLLVEP PNKKAAVKNV 480 NSVRNISTNN SRPLSADDIQ KAKMRAMFMQ EKYGKVDTSK ASDKLQALET QKTSGLVNST 540 VLPVPRKPLG STAQLVDTSP STSNQSTVPQ PDKPEISGGL KLSISSQKNV IEKLDSRRVP 600 WRIPPAVWID PSWSVGAGDS SKELEVQTQR NRREKETFYA NQKDIPLNPK DPWDLEMDFD 660 DSLTPEIPID QAPDADTMEM DSVGAAPNAV APVEDKQIGS TSSTSVSVAN GTNREDPEPD 720 LELLTVLLKN PQLVFALTSN NGENVTSEQT VALLDTLKRT GLGLSELVST LGNGAGAPKE 780 PEPEPIPASL PSPTPSDQTT RAAWGSEHPT QARAPNLQQP QLSNRENTPP IANTVQQSFS 840 NVISSLPSQP YAPVSVLPAQ IQANGPSLPQ LAVSINPPIE HVSPVNNHLN RASVHQHGQQ 900 YALASDPVAI SLHQQAAVNK SSYGLQSIPN HSVVHSSVPE PDASYTTLPW QSNPAHVTNT 960 GRNAIAEPWA ARTTNSYNTA SASTVPYASQ NAYGDQRTRS AYNPYVSAAV SSQTVLPGHG 1020 LDRNGYSRPM EYQTMARDGY QRHSRSPDPS ADRNYGGTQG YNQQPLTHWS GGQGQQSYNT 1080 EPSRKWSSAQ QSYTPAEPST RQWSSAHQGY APAEPSRQWS SERQGYNVEP SRPWSSGQQG 1140 QNPEASRQWN LGKQDPYNPS DGRRSYDHHW RR*

Sequence ? help Back to Top

Protein Sequence Length: 1173 aa Download sequence Send to blast

MELVPFKPAA GALVEAGSGA GAGSIPAMVA AQQQMLHEQA DQLQRLVVAQ CRLTGVNPLA  60
QEMAAGALSI KIGKRPRDLL NPKAVKCMQS LFALKDTIGK KETREISLLC GVTVTQVREF  120
FTSQRSRVRK FVQLSREKAL RVEASKEHDN VCSISTEQIP LDIEAHAEVI EPLRTLEPVV  180
PQSSSQPMGV PQVSSQPMGL PQGLLQPMEV FQNSLQQATA QQNFAAPVMP SGTMGVQPTD  240
AKISSDSVQK EIKQEEVHPG VESEDKKFLE SIFALMRKEE TFSGQVKLLE WILQINNVTV  300
LSWFVTMGGL TIMSTWLSLA AIEEQTSVIL VIFKVLLHLP LHKALPAHMS VVLQTINRLR  360
FYRTQDISSR ARNLLSRLSK VLVRSQALKK PQKELICKQR ISEILRDESW KSEVDITEEI  420
LALTDGANES SKPEPRKTPM LLTAAADETN KRSATQTKSK QKRKVLLVEP PNKKAAVKNV  480
NSVRNISTNN SRPLSADDIQ KAKMRAMFMQ EKYGKVDTSK ASDKLQALET QKTSGLVNST  540
VLPVPRKPLG STAQLVDTSP STSNQSTVPQ PDKPEISGGL KLSISSQKNV IEKLDSRRVP  600
WRIPPAVWID PSWSVGAGDS SKELEVQTQR NRREKETFYA NQKDIPLNPK DPWDLEMDFD  660
DSLTPEIPID QAPDADTMEM DSVGAAPNAV APVEDKQIGS TSSTSVSVAN GTNREDPEPD  720
LELLTVLLKN PQLVFALTSN NGENVTSEQT VALLDTLKRT GLGLSELVST LGNGAGAPKE  780
PEPEPIPASL PSPTPSDQTT RAAWGSEHPT QARAPNLQQP QLSNRENTPP IANTVQQSFS  840
NVISSLPSQP YAPVSVLPAQ IQANGPSLPQ LAVSINPPIE HVSPVNNHLN RASVHQHGQQ  900
YALASDPVAI SLHQQAAVNK SSYGLQSIPN HSVVHSSVPE PDASYTTLPW QSNPAHVTNT  960
GRNAIAEPWA ARTTNSYNTA SASTVPYASQ NAYGDQRTRS AYNPYVSAAV SSQTVLPGHG  1020
LDRNGYSRPM EYQTMARDGY QRHSRSPDPS ADRNYGGTQG YNQQPLTHWS GGQGQQSYNT  1080
EPSRKWSSAQ QSYTPAEPST RQWSSAHQGY APAEPSRQWS SERQGYNVEP SRPWSSGQQG  1140
QNPEASRQWN LGKQDPYNPS DGRRSYDHHW RR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	754	759	DTLKRT

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.4962	0.0	callus\| leaf\| root\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5KG752400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815839.1	0.0	homeobox protein LUMINIDEPENDENS isoform X1
TrEMBL	A0A2S3HNA2	0.0	A0A2S3HNA2_9POAL; Uncharacterized protein
STRING	Pavir.Ea03823.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8043	30	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	2e-95	HB-other family protein

Link Out ? help Back to Top
Phytozome	Pavir.5KG752400.1.p