PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG753100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 525aa    MW: 55065.9 Da    PI: 8.0262
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG753100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05105127123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+k F r  nL+ H r H
  Pavir.5KG753100.1.p 105 FVCEICHKGFQRDQNLQLHRRGH 127
                          89*******************88 PP
2zf-C2H212.30.00051220238523
                          TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                          dCg++Fsr++++++H   +
  Pavir.5KG753100.1.p 220 DCGTVFSRRDSFVTHRAFC 238
                          9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.99E-6104127No hitNo description
Gene3DG3DSA:3.30.160.607.9E-5104127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.637105127IPR007087Zinc finger, C2H2
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.1E-4178210IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.99E-6185210No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MSGAAARECA GSFSSVSSNN TASREVEEEF LQHQQRQFHI KPLLGSPPEM GTDDGGDDLQ  60
RVTGPSEAPP APPTVKKKRS LPGTPDPSAE VIALSPRTLM ATNRFVCEIC HKGFQRDQNL  120
QLHRRGHNLP WKLRQRGGAD GGAAGGGGPP RKRVYVCPEA SCVHHNPARA LGDLTGIKKH  180
YCRKHGEKKW KCERCAKRYA VHSDWKAHAK VCGTREYKCD CGTVFSRRDS FVTHRAFCDA  240
LAQENNKLAQ PMNMATVASA LQGQAHHLAF PPSSHSHQEA DDDLDAAEDD DFDLDTKSPQ  300
LRMLPAAMSD DAAPLLPPLS MAGCMLSSLA AARPAPSPSA AAFFAGARIG LDGPSDPNRS  360
MGGSATASMS ATALLQKAAE MGATTGGGYG AGFATVGFGP MLGGPDRLPM SPFGPLKAPP  420
PPPPYDDGLL LLGQAQLVGL DAGRLLPGQQ LFYGGGGGGV GSMTRAIGSL THGGGQQQTT  480
ATEHRRPDGL RVVDYLGVDD HQRSFSGGGG VSPFGPHIGG GPWA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-33186253370Zinc finger protein JACKDAW
5b3h_F2e-33186253370Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG753100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0666520.0BT066652.1 Zea mays full-length cDNA clone ZM_BFb0043G06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817951.10.0protein indeterminate-domain 2-like
TrEMBLA0A2T7DBX20.0A0A2T7DBX2_9POAL; Uncharacterized protein
STRINGPavir.Ea03972.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125542534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-102C2H2 family protein