PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG753500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YB
Protein Properties Length: 155aa    MW: 17250.2 Da    PI: 6.9341
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG753500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB143.84e-4531122495
                NF-YB   4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                          +d++lPianv+rimk vlP +akisk+aket+qec++efi+fvt+eas++c+re+rktingdd+++a+ +lG+++y+++++ yl++yre 
  Pavir.5KG753500.1.p  31 HDNLLPIANVGRIMKDVLPPQAKISKHAKETIQECATEFIGFVTGEASERCRRERRKTINGDDICHAMRSLGLDHYANAMRRYLQRYRES 120
                          699**************************************************************************************8 PP

                NF-YB  94 eg 95 
                          e+
  Pavir.5KG753500.1.p 121 EE 122
                          85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.4E-4130122IPR009072Histone-fold
SuperFamilySSF471132.48E-3332133IPR009072Histone-fold
PfamPF008082.9E-243598IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.4E-146280No hitNo description
PRINTSPR006154.4E-148199No hitNo description
PRINTSPR006154.4E-14100118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MSENFDFTGF AQQGQPQPQN LSRDDNSRAG HDNLLPIANV GRIMKDVLPP QAKISKHAKE  60
TIQECATEFI GFVTGEASER CRRERRKTIN GDDICHAMRS LGLDHYANAM RRYLQRYRES  120
EELAAALNSG GGGIQIDVRA ELSIFRGDEQ QGKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B5e-3731119492Transcription factor HapC (Eurofung)
4g92_B5e-3731119492Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers, siliques and young rosettes. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG753500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9742441e-96JN974244.1 Zea mays HAP3-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814482.11e-97transcriptional activator hap3-like
SwissprotO040277e-42NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A3L6PLU81e-101A0A3L6PLU8_PANMI; Nuclear transcription factor Y subunit B-4-like
STRINGPavir.Ea03969.1.p1e-112(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29173887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.13e-44nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]