PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG760100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 206aa    MW: 23159.8 Da    PI: 7.5057
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG760100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM583.4e-18261507128
                  NAM   7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk..atgkdkevl 93 
                          F+Pt++elv ++L+++++g + +++ ++ e+d + + Pw+L +++   +++ +fF+ r ++ a     +r ++ +g W   +t   ++v+
  Pavir.5KG760100.1.p  26 FDPTEDELVLHFLRPQLRGFPPRVAGAVLEADPCGAAPWELLARYG-LREQGHFFAARGRRRA---SVRRaVAGAGAWMhsSTRAGRSVT 111
                          9***********************999**************85553.35677*****999876...456646789***844567789999 PP

                  NAM  94 skkgelvglkktLvfy.....kgrapkgektdWvmheyrl 128
                          + +  + + +  + fy     +  + + ++t Wvm+ey++
  Pavir.5KG760100.1.p 112 DLGVVVHWSRVKFCFYarergT-GQGQQRSTGWVMDEYEI 150
                          988889999*******665322.2334469********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.82820177IPR003441NAC domain
SuperFamilySSF1019412.48E-2725177IPR003441NAC domain
PfamPF023654.0E-1226150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MEDEEPNLSA EEGAADHLAA GDLGGFDPTE DELVLHFLRP QLRGFPPRVA GAVLEADPCG  60
AAPWELLARY GLREQGHFFA ARGRRRASVR RAVAGAGAWM HSSTRAGRSV TDLGVVVHWS  120
RVKFCFYARE RGTGQGQQRS TGWVMDEYEI TDPRCYRRCD EEGEEDHYWV LCRVRKSNKK  180
RRWRRVDDLQ SDSGQDLTAA ARLRA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG760100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126095e-50CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816116.11e-111NAC domain-containing protein 18-like
TrEMBLA0A3L6PL561e-119A0A3L6PL56_PANMI; NAC domain-containing protein 2-like
STRINGPavir.Ea04027.1.p1e-148(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137612528