PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG778800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 258aa    MW: 27249.6 Da    PI: 7.0868
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG778800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.73.5e-30115168155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          +prl+Wtp+LH+rFv++v++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Pavir.5KG778800.1.p 115 RPRLVWTPQLHKRFVDVVAHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 168
                          59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-31112173IPR009057Homeodomain-like
PROSITE profilePS5129410.648112171IPR017930Myb domain
SuperFamilySSF466892.69E-19113172IPR009057Homeodomain-like
TIGRFAMsTIGR015579.5E-24116168IPR006447Myb domain, plants
PfamPF002493.9E-8118167IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGEEAADDYD LELLGGADCE RVMEWETGLP GADELTPLSQ PLVPPGLAAA FRIPPEPGRT  60
LLDVQRASAA TVSRLRRASS SSSSGSFQPY FLSGAGAEGG AAAAAAEATN NSSKRPRLVW  120
TPQLHKRFVD VVAHLGIKNA VPKTIMQLMN VEGLTRENVA SHLQKYRLYV KRMQGLSNEG  180
PSASDHIFAS TPVPHSLVHE PQAQVPAPAP PMWVTVGMLT GSNSGSGAAA GYGGYGYGYG  240
YQQQQLASHH HHRAGDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-35115171157Transcription factor LUX
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.76141e-139callus| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is essential for the generation of the circadian clock oscillation. Binds to specific sites on CCA1 promoter leading to CCA1 activation (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG778800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16164597}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703063e-95HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
GenBankKF7694443e-95KF769444.1 Triticum aestivum cultivar Chinese Spring LUX-B gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817497.11e-120transcription factor PCL1
SwissprotQ94DH39e-91PCL1_ORYSJ; Transcription factor PCL1
TrEMBLA0A2S3HMQ41e-119A0A2S3HMQ4_9POAL; Uncharacterized protein
STRINGPavir.Ea04181.1.p1e-142(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.23e-50G2-like family protein