PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG779100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 379aa    MW: 40933.7 Da    PI: 7.5839
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG779100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-30118174258
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                          +Dgy+WrKYGqK++k+s++prsYYrCt ++C++kk+ver+ ++ +++ +tYeg H h
  Pavir.5KG779100.1.p 118 EDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCNAKKQVERAMDEADTLLVTYEGLHLH 174
                          8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.0E-28111175IPR003657WRKY domain
PROSITE profilePS5081125.924112177IPR003657WRKY domain
SuperFamilySSF1182902.75E-25115175IPR003657WRKY domain
SMARTSM007744.9E-34117176IPR003657WRKY domain
PfamPF031063.2E-24118174IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MAEELHQVPP PLGYLEADDD GPLRRRDRES MVNKLISTVY SGPTISDIES VLSFTGGGAH  60
HHQNINQLAD DAMDNYSSAG VVSTSPPVVF SPKTEVLSKM ENKYTLKIKT CGNGLLAEDG  120
YKWRKYGQKS IKNSPNPRSY YRCTNPRCNA KKQVERAMDE ADTLLVTYEG LHLHYTYSHF  180
LLQHQQQQAA PDPPPARPPA AAGGGGSTSK KPKLLQPRGC PAAAPIIDDD DAAAAAGDLD  240
LFLLHGGGGG RSSRSSPSRC WQHAAATSPR RRDDGLTMPL GVFPQQETDE DGCGFVDHHR  300
RRQHTCSNNN KGGLLEDVVP LLVRRPCSST STPITISRSS SPPPSLSTTT TAASSSVSWN  360
NNPTSPYSID MAILSNIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-181161741371WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG779100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0332402e-97BT033240.1 Zea mays full-length cDNA clone ZM_BFb0071M13 mRNA, complete cds.
GenBankBT0624332e-97BT062433.1 Zea mays full-length cDNA clone ZM_BFb0296J15 mRNA, complete cds.
GenBankKJ7275732e-97KJ727573.1 Zea mays clone pUT5433 WRKY transcription factor (WRKY120) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819132.11e-131probable WRKY transcription factor 41
TrEMBLA0A2S3HMN91e-130A0A2S3HMN9_9POAL; Uncharacterized protein
STRINGPavir.Ea04136.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75253551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.11e-41WRKY DNA-binding protein 49