PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG000200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 144aa    MW: 15917.8 Da    PI: 9.3161
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG000200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR127.41.1e-08102141142
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkre 42 
                          +fY++YA+evGFsvr+ ++kk   n++i  ++++ s+eg+++
  Pavir.5NG000200.1.p 102 EFYKSYAHEVGFSVRVGQHKKG--NEKILFKRYYYSREGYKR 141
                          6*****************9988..8999***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-6102141IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MEPAAARHAM EFGAASSGIG AISNRSLSAM EPSAVRDVNS SVVDDHAGIT VDARVESHLE  60
RPSTPQHLTT SVSTSDTINT NSKEHLKPKI GMIFDTLKDV EEFYKSYAHE VGFSVRVGQH  120
KKGNEKILFK RYYYSREGYK RRT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG000200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655317.14e-36PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_006658608.14e-36PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA2Y3U33e-36A2Y3U3_ORYSI; Uncharacterized protein
TrEMBLB8AXF06e-35B8AXF0_ORYSI; Uncharacterized protein
TrEMBLQ60DY02e-34Q60DY0_ORYSJ; Uncharacterized protein
STRINGSb01g028975.14e-26(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15006915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.13e-07FAR1-related sequence 7