PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG006800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 621aa    MW: 67524.4 Da    PI: 8.0019
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG006800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12466512455
                          HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Pavir.5NG006800.1.p 466 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 512
                          799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.0E-5060245IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831462511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-19465529IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.83E-15465516No hitNo description
Gene3DG3DSA:4.10.280.102.5E-18466525IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-10466512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-16468517IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MVMKMEMEDD GAVGGTGGTW TEEDRALGAA VLGTDAFAYL TKGGGAISKG LVAASLPDDL  60
QNKLQELVES DGPGTGWNYA IFWQLSRTKS SDLVLGWGDG SCREPRDGEV GAAASAGSDD  120
TKQRMRKRVL QRLHMAFGVA DEEDYAPGID QVTDTEMFFL ASMYFAFPRR AGGPGQVFAA  180
GIPLWIPNNE RKVFPANYCY RGFLANAAGF RTIVLVPFES GVLELGSMQH VAESSDTIQT  240
IRSVFTGASG NKAAVQRHEG NGPTPPERSP ALAKIFGKDL NLGRPSAVPA VGVSKIDERS  300
WEQRAAAGGG TSLLPNVQKG LQNFTWSQAR GLNSHQQKFG NGVLIVSNEA AHRSNGAADS  360
PSATQFQLQK APQLQKLQLQ KLPHIQKTPQ LVNQQPLQPQ VPRQIDFSAG SSSKSGVLVT  420
RAAVLDGESA EMDGLCKEEG PPPVIEDRRP RKRGRKPANG REEPLNHVEA ERQRREKLNQ  480
RFYALRAVVP NISKMDKASL LGDAITYITD LQKKLKDMET ERERLLESGM VDPRERAPRP  540
EVDIQVVQDE VLVRVMSPME SHPVKKVFQA FEEAEVRVGE SKVTGNNNGT VVHSFIIKCP  600
GTEQQTREKV IAAMSRAMSS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-28460522264Transcription factor MYC2
5gnj_B6e-28460522264Transcription factor MYC2
5gnj_E6e-28460522264Transcription factor MYC2
5gnj_F6e-28460522264Transcription factor MYC2
5gnj_G6e-28460522264Transcription factor MYC2
5gnj_I6e-28460522264Transcription factor MYC2
5gnj_M6e-28460522264Transcription factor MYC2
5gnj_N6e-28460522264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1447455RRPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.207500.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG006800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816895.10.0transcription factor bHLH13-like
TrEMBLA0A3L6SNM90.0A0A3L6SNM9_PANMI; Transcription factor bHLH13-like
STRINGPavir.Eb00041.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.32e-71bHLH family protein