PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG011100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 177aa    MW: 19760.5 Da    PI: 10.0908
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG011100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.4e-203670135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C+ C+ttkTplWR gp+g+k+LCnaCG++yrk+++
  Pavir.5NG011100.1.p 36 CADCHTTKTPLWRGGPEGPKSLCNACGIRYRKRRR 70
                         ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.1E-193080IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-133070No hitNo description
PROSITE profilePS5011413.3233066IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.1E-163570IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.14E-153571No hitNo description
PfamPF003203.7E-183670IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403661IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MGMEMEMDKE KEMETDPDLN PNPSPSPSPD NSAKACADCH TTKTPLWRGG PEGPKSLCNA  60
CGIRYRKRRR QALGLDAADA QQDHHQRKNK AADPHEDQQQ PKRKAAAAAS STTTTKKDKD  120
KKRKDRQVTV ELRVVPFGKE VMLKQRRQMR RNKCMSEEER AAVLLMALSS GVIYAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16569RKRRR
2101123KRKAAAAASSTTTTKKDKDKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.352870.0callus
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG011100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9674446e-40EU967444.1 Zea mays clone 303140 GATA zinc finger family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150557.13e-64uncharacterized protein LOC100284189
TrEMBLK3XM601e-65K3XM60_SETIT; Uncharacterized protein
STRINGPavir.Eb04066.1.p1e-128(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.13e-20GATA transcription factor 15