PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG013400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 452aa    MW: 52782.5 Da    PI: 10.0862
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG013400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.53.8e-1741120190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +fYn ++ evGF +r+ +  ++ ++g  t+r+ vC+++g+++++k+k         ++ ++C+a++++++++d++w +++ e+eHnHe++
  Pavir.5NG013400.1.p  41 EFYNLHSWEVGFGTRMGNWDRN-KSGYQTMREVVCQRQGFDRRTKSK---------TKGCKCRAMIRLHRTEDDRWFISTYEKEHNHEFS 120
                          6*****************9999.677799***********9998766.........899*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.8E-1441120IPR004330FAR1 DNA binding domain
PfamPF105511.0E-27243335IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MGAAERSLRK YCDAKSAGLN PKYIFEPSVG LQFDSEDEAV EFYNLHSWEV GFGTRMGNWD  60
RNKSGYQTMR EVVCQRQGFD RRTKSKTKGC KCRAMIRLHR TEDDRWFIST YEKEHNHEFS  120
TTDAEKREWN SHKKIAHTVR DMIQYLRENN VTLSKLHCIM GSLFGSMESI PFTRRSLKTI  180
CAQLAREQRD DDIRKTLELF RKMRSDDPGF QFSVDLDEKE QIKTLIWVTG KSRSDYCCFG  240
DAIAFDTTYS TNLYKIPFGL FVGVNNHFQS TIFGGVFMRD EKAASFKWIF NEFITLMGGV  300
HPKTILTDQC KAMEVAIKEI MPNTAHLWCK WHVFKDARTE IGPVYRKNAP FRDEFRKFIT  360
EMLTVSEFKN AWHSLVKRYK LTKNPFMVRS YDKRKKWAKC YNKGKFCAGM TSTQRSESAN  420
NMLKTVVPRN SSMNRFVFFL KGHRKGRGSP T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG013400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197126.11e-158protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A3L6RVD80.0A0A3L6RVD8_PANMI; Uncharacterized protein
STRINGPavir.Eb00053.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-68FAR1-related sequence 5