PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG014600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 141aa    MW: 15297.3 Da    PI: 11.6347
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG014600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM22.33.5e-07121307121
                  NAM   7 FhPtdeelvveyLkkkvegkklelee...v.ikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWk.at.g 87 
                           hP+d++l+++ L++ v++++  ++    +  +  + +   P++  +  ++ a +++ wyf ++++ +y+    +  a  +g+W+ +t g
  Pavir.5NG014600.1.p  12 LHPSDHDLITFVLRPMVARRQQGFDAgggFgPPG-RRLLRRPREAGRavRAGAgSRTCWYFICPARCRYK---AAAGALGEGRWNsETgG 97 
                          69**************999994442222221333.44555788886423333324558999999999996...45668899***964425 PP

                  NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdW 121
                          +  +v  ++g+ vg  +tL +y+    + + t W
  Pavir.5NG014600.1.p  98 EVSPVWGADGRRVGRSRTLSYYSYGGTR-TTTPW 130
                          68899999**************654444.57777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510059.8926140IPR003441NAC domain
SuperFamilySSF1019413.01E-910130IPR003441NAC domain
PfamPF023651.7E-812131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MAVADRLQAL GLHPSDHDLI TFVLRPMVAR RQQGFDAGGG FGPPGRRLLR RPREAGRAVR  60
AGAGSRTCWY FICPARCRYK AAAGALGEGR WNSETGGEVS PVWGADGRRV GRSRTLSYYS  120
YGGTRTTTPW TTVTSTKSFF *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG014600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791596.17e-28uncharacterized protein LOC112872751
TrEMBLA0A2T7C3T51e-28A0A2T7C3T5_9POAL; Uncharacterized protein
STRINGPavir.J18422.1.p8e-25(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43632158