PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG022100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 435aa    MW: 49080.6 Da    PI: 11.6985
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG022100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.31.1e-17121672128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeek..ewyfFskrdkkya........tgkrknra.. 77 
                          p+GfrF Pt+ el+ + L +++++ k   ++++++++++i++++P++L +++k++ +   +yfFs+r+ +++           + +++  
  Pavir.5NG022100.1.p  12 PRGFRFVPTELELI-RLLSHRIHRGKlpPSFDRIFHNLRILDYHPEELYERYKEDAEhhYIYFFSRREFQKKgaggaapgD--KDQKKga 98 
                          89************.8999999988865555667999***********866555444225599999886665444444321..2222245 PP

                  NAM  78 ..................tksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                            ++ g Wka+g  +++      +g   g   tLvfy  r     k++W mhe+ +
  Pavir.5NG022100.1.p  99 ggappgdknqkgprlvraARGGGWKASGGGQNLRWPrrkGGFYAGRWMTLVFY-DRG--VDKSKWSMHEFVV 167
                          677777777777777766999********9999887433444599********.344..459*******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-13682IPR003441NAC domain
PROSITE profilePS5100523.68411194IPR003441NAC domain
PfamPF023651.2E-1112166IPR003441NAC domain
SuperFamilySSF1019413.4E-9105192IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MADGFLTRHG FPRGFRFVPT ELELIRLLSH RIHRGKLPPS FDRIFHNLRI LDYHPEELYE  60
RYKEDAEHHY IYFFSRREFQ KKGAGGAAPG DKDQKKGAGG APPGDKNQKG PRLVRAARGG  120
GWKASGGGQN LRWPRRKGGF YAGRWMTLVF YDRGVDKSKW SMHEFVVPVH EQENLISSPP  180
THFKDLALYR LYILRSAAME SENDGAGGST RMLANTYDDH FSPSTAVVPC TPVQPWGVFD  240
AGASTSQMPP PPQHRPSVEH AHCYHHHSAS SAAARQQAHD MPVHDAGLPG DWCQFVSPRG  300
RHRRRCQCCQ PQPTRRQTGL PLRRRTALGK KPVTSWPRAH RVCRRPLGAR RRSSTPTPRQ  360
SRRTPSLQTV LSRRRRRRRP GRRMSCRPPK TSAWPMGCRT GISTSRHSTI TASSSPWRDT  420
GVPSVRRTAG DGGR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372378RRRRRRR
2373381RRRRRRPGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG022100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967494.11e-97NAC domain-containing protein 48
TrEMBLA0A2S3HZ411e-144A0A2S3HZ41_9POAL; Uncharacterized protein
TrEMBLA0A2T7DT221e-144A0A2T7DT22_9POAL; Uncharacterized protein
STRINGPavir.Eb00185.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367