PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG034300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 257aa    MW: 27225.7 Da    PI: 7.8016
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG034300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-161462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         rg+W++eEde l  +v ++G+g +W + +++ g++R++k+c++rw++yl
  Pavir.5NG034300.1.p 14 RGPWSPEEDEALRSYVLRHGSGgNWISMPKKAGLKRCGKSCRLRWLNYL 62
                         89*********************************************97 PP
2Myb_DNA-binding43.38.5e-1469111246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g +T eEd  ++ +  qlG++ W++Ia+ +  gRt++++k++w++
  Pavir.5NG034300.1.p  69 GGFTDEEDAVIISLYSQLGSK-WSLIASQLE-GRTDNDVKNYWNT 111
                          569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.171962IPR017930Myb domain
SuperFamilySSF466893.72E-2712109IPR009057Homeodomain-like
SMARTSM007172.2E-111364IPR001005SANT/Myb domain
PfamPF002491.9E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-241569IPR009057Homeodomain-like
CDDcd001676.48E-91662No hitNo description
PROSITE profilePS5129422.37363117IPR017930Myb domain
SMARTSM007179.4E-1267115IPR001005SANT/Myb domain
PfamPF002498.7E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2370117IPR009057Homeodomain-like
CDDcd001675.62E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGRTPCCDRA AVKRGPWSPE EDEALRSYVL RHGSGGNWIS MPKKAGLKRC GKSCRLRWLN  60
YLRPDIRHGG FTDEEDAVII SLYSQLGSKW SLIASQLEGR TDNDVKNYWN TKLKRRLLAA  120
AATAGIVSTR SPPSVPRLPA ATASAPPAAA TVTTHAPSLF PLLAIPTVKT EMYTCDDFLA  180
PAAFRDDPFA AADGSTSASA ASSASNWSAD NGAVGGGEGS FLLDFCAGSG LGAADDHLQL  240
PGGYYYYPLD PNLSLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG034300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794161e-161HF679416.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB10 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817369.11e-153transcription factor RAX1-like
RefseqXP_025817370.11e-153transcription factor RAX1-like
TrEMBLA0A3L6SQD01e-153A0A3L6SQD0_PANMI; Transcription factor RAX2-like
STRINGPavir.Eb00254.1.p1e-175(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.14e-61myb domain protein 87