PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5NG035700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 245aa MW: 24522 Da PI: 9.6367

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5NG035700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.1	7.8e-38	40	95	4	59
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 + l+cprC+s +tkfCyynny+lsqPr+fC+aCrryWt+GGalrn+PvGgg+rk Pavir.5NG035700.1.p 40 AGLPCPRCESVDTKFCYYNNYNLSQPRHFCRACRRYWTRGGALRNIPVGGGTRKAT 95 5689*************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	28.882	42	96	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-32	42	94	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-19	44	87	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	44	80	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MVRCAADMEA GHQAAEGGAL AVVPAAGGRG GGAGGGREPA GLPCPRCESV DTKFCYYNNY 60 NLSQPRHFCR ACRRYWTRGG ALRNIPVGGG TRKATPAATR RKRPASTPPA PAPPAAAAAG 120 VAVPPLTVSG PHGALLRQYG LPFPAPATAS PMAAVDPDRR LLDLGGSFSS LIAAASGPDV 180 VGGHFSAGFL VGGLPPALVH PPGGGAAAGT LPPPPPQPQP QPVSQALAVP EGLFWSMGWP 240 DLSI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	28	36	RGGGAGGGR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5NG035700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT061950	8e-77	BT061950.2 Zea mays full-length cDNA clone ZM_BFb0200H06 mRNA, complete cds.
GenBank	KJ727013	8e-77	KJ727013.1 Zea mays clone pUT3994 C2C2-DOF transcription factor (DOF7) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818172.1	2e-96	dof zinc finger protein DOF1.7
Swissprot	O82155	2e-32	DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBL	A0A2T7DSB6	1e-106	A0A2T7DSB6_9POAL; Uncharacterized protein
STRING	Pavir.Ea00244.1.p	3e-92	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	3e-25	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Pavir.5NG035700.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]