PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG041300.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 232aa    MW: 24279.2 Da    PI: 7.4166
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG041300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.91.2e-29128186159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDg++WrKYG+K vk+s++pr+YYrC+ +gC vkk+ver+ +dp++v++tY g Hnh 
  Pavir.5NG041300.2.p 128 LDDGFKWRKYGKKAVKSSPNPRNYYRCSAEGCGVKKRVERDGDDPRYVVTTYDGVHNHA 186
                          59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-31115188IPR003657WRKY domain
SuperFamilySSF1182903.01E-27120188IPR003657WRKY domain
PROSITE profilePS5081131.732123188IPR003657WRKY domain
SMARTSM007741.8E-33128187IPR003657WRKY domain
PfamPF031061.7E-23129185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MAAPLGLVGH EAYAACSYPQ PAAAAASSYF SPPELVADSG GAVMELAPPM ADYCLPGIMG  60
ARTPDYYCSP PAPVFANGGA AAAENEMMNS MSYVGDDGRM ITMSGSAGNG GRPSPRIGFR  120
TRSEVDVLDD GFKWRKYGKK AVKSSPNPRN YYRCSAEGCG VKKRVERDGD DPRYVVTTYD  180
GVHNHAVPGR GAQRPARSAP LVAAPWSAPA APCDPWGTQL HAAAHSSESS Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-27118188777Probable WRKY transcription factor 4
2lex_A1e-27118188777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG041300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586130.0KU058613.1 UNVERIFIED: Panicum miliaceum WRKY28-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818051.11e-124WRKY transcription factor WRKY24-like
TrEMBLA0A2S3HYH61e-122A0A2S3HYH6_9POAL; Uncharacterized protein
STRINGPavir.J08526.1.p1e-167(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.18e-39WRKY DNA-binding protein 51