PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG041600.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 258aa    MW: 27800 Da    PI: 6.7081
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG041600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.35.2e-11178221548
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                          kr +r   NR +A+rsR RK+++i eLe+ v  L++e +aL  +
  Pavir.5NG041600.3.p 178 KRVKRILANRQSAQRSRVRKLQYISELERSVTLLQTEVSALSPR 221
                          8999*********************************9998755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-13174238IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.668176232IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.7E-13178232No hitNo description
PfamPF001705.1E-10178228IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.14E-12178232No hitNo description
CDDcd147031.82E-24179229No hitNo description
PROSITE patternPS000360181196IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MAQLPPKIPA MAPAWPEFGG GHHHHAHHHQ QRSPSVGTFL AAPMPPQQPT WVEEFLDFTA  60
AKRGAHRRTV SDSVAFLEPG PDDGNAGDGA HDFDRLDDDQ LLSMFSDDLP PPPPPPQQQQ  120
AAPAPAPVAS SSSPSDHNSI NDEKTDRGET EEAQSKCHGD APAAPGQPAS AAAAVDPKRV  180
KRILANRQSA QRSRVRKLQY ISELERSVTL LQTEVSALSP RVAFLDHQRS LLTLGNSHLK  240
QRIAALAQDK IFKDGLP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.226421e-39root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots and panicles. {ECO:0000269|PubMed:18065552}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG041600.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by dehydration and salt stress. {ECO:0000269|PubMed:18065552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817786.11e-129basic leucine zipper 2-like
SwissprotQ5QNI51e-106BZP02_ORYSJ; Basic leucine zipper 2
TrEMBLA0A2S3HYX31e-128A0A2S3HYX3_9POAL; Uncharacterized protein
TrEMBLA0A2T7DSS51e-128A0A2T7DSS5_9POAL; Uncharacterized protein
STRINGPavir.J05339.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.14e-69bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]