PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG041600.4.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 260aa    MW: 28893.8 Da    PI: 12.0486
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG041600.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.61.7e-10129171850
                          HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                          rr   NR +A+rsR RK+++i eLe+ v  L++e +aL  ++ 
  Pavir.5NG041600.4.p 129 RRILANRQSAQRSRVRKLQYISELERSVTLLQTEVSALSPRVA 171
                          78889*****************************999987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575118No hitNo description
SMARTSM003383.1E-8125186IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.07E-11127180No hitNo description
Gene3DG3DSA:1.20.5.1705.9E-13127180No hitNo description
PfamPF001704.6E-9128176IPR004827Basic-leucine zipper domain
PROSITE patternPS000360129144IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.841129180IPR004827Basic-leucine zipper domain
CDDcd147031.24E-21129177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MPATGRTTST ASTTTSSCPC SQTTCRRRRR RHSSSRPLPR PRPWRARRRR PTTTASMTRR  60
RTGARPRRRR ASATGTPPPR RGSRPPPPPQ LIPSASRGDL DSPLNSGNAP PCEAEFTNLL  120
AFPCCHDHRR ILANRQSAQR SRVRKLQYIS ELERSVTLLQ TEVSALSPRV AFLDHQRSLL  180
TLGNSHLKQR IAALAQDKIF KDAHQEALKK EIERLRQIYL QQSLKNAESS PTPDAAPIRS  240
DKDLIASEGT AAPEPCPPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12530RRRRRR
24769RRRPTTTASMTRRRTGARPRRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.226428e-90root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG041600.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0368211e-134BT036821.1 Zea mays full-length cDNA clone ZM_BFb0141B19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968609.13e-77basic leucine zipper 2
TrEMBLK3XK886e-76K3XK88_SETIT; Uncharacterized protein
STRINGPavir.J05339.1.p3e-83(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.12e-52bZIP family protein