PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG044800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family DBB
Protein Properties Length: 344aa    MW: 35806 Da    PI: 5.8102
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG044800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box171.2e-05444539
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                          C+ +e  e++  C  ++  lC+ C    H        H +
  Pavir.5NG044800.1.p  4 LCSACEAAEARVLCCADEAALCARCDRDVHAAnrlagkHHR 44
                         7******99******************99955677778554 PP
2zf-B_box28.72.8e-095696438
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                         + C+ ++e ++ +fC +++ llC++C ++ H        H+
  Pavir.5NG044800.1.p 56 PGCDICQESHAYFFCVEDRALLCRSCDVAVHTAnafvsgHR 96
                         56******99*******************995455666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.637147IPR000315B-box-type zinc finger
SMARTSM003367.2E-8147IPR000315B-box-type zinc finger
CDDcd000211.73E-7347No hitNo description
SMARTSM003361.2E-1653100IPR000315B-box-type zinc finger
PROSITE profilePS501199.75553100IPR000315B-box-type zinc finger
PfamPF006435.1E-85796IPR000315B-box-type zinc finger
CDDcd000212.26E-1058100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MKVLCSACEA AEARVLCCAD EAALCARCDR DVHAANRLAG KHHRLPLQPP AAASAPGCDI  60
CQESHAYFFC VEDRALLCRS CDVAVHTANA FVSGHRRFLL TGVQVGLQPD AQEPAPDPPN  120
AAAAAAAAPP PLPTPPPAKK ARSSPAPLYS DDDIDWGAGG PDVGVARNLP DWSLVDEQFA  180
APVPTPAEPM VSRTPSKRSP RRTLTAAFTI QGGFAGGMPD WPLDEFFGFS EFNAGLGFTE  240
NGTSKADSGK LGSTDGSPTG RSSSDSAQDF FGQVPEFHQL PVPELPSPPT ASGLHWQGGP  300
RHGATAADTA AVSVPDISSP ENPFRCFAAG VGQTQPAPAK RRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG044800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0424801e-138BT042480.1 Zea mays full-length cDNA clone ZM_BFb0287P19 mRNA, complete cds.
GenBankBT0642771e-138BT064277.1 Zea mays full-length cDNA clone ZM_BFc0155A07 mRNA, complete cds.
GenBankBT0668551e-138BT066855.1 Zea mays full-length cDNA clone ZM_BFb0081H14 mRNA, complete cds.
GenBankEU9643641e-138EU964364.1 Zea mays clone 278314 B-box zinc finger family protein mRNA, complete cds.
GenBankHQ8588001e-138HQ858800.1 Zea mays clone UT1887 ORPHAN transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819038.10.0B-box zinc finger protein 22-like
TrEMBLA0A2T7DSJ90.0A0A2T7DSJ9_9POAL; Uncharacterized protein
STRINGPavir.Eb00238.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.13e-43light-regulated zinc finger protein 1