PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG049100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 243aa    MW: 25785.7 Da    PI: 6.25
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG049100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.4e-174694355
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y+GVr +  +g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++ a+++++g
  Pavir.5NG049100.1.p 46 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPCPEMAARAHDVAALSIKG 94
                         9****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.2E-124494IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-2045103IPR016177DNA-binding domain
SMARTSM003802.4E-3445108IPR001471AP2/ERF domain
PROSITE profilePS5103222.845102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-3145103IPR001471AP2/ERF domain
PRINTSPR003673.1E-94657IPR001471AP2/ERF domain
CDDcd000183.38E-2946104No hitNo description
PRINTSPR003673.1E-96884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MRDLSSDTSS YSSSPSTSSS SRKSGKSSKR PRPDDGAGEG APPPAYRGVR MRAWGKWVSE  60
IREPRKKSRI WLGTFPCPEM AARAHDVAAL SIKGARAVLN FPDLAPALPR PASLAPRDVQ  120
AAAARAALMQ HKHRQQPGGA AAGTDSSSSP VLAPAAACAA AAAAADDAQR PAGSNDHRHD  180
EPEPEPSPEE RQPAQVEVAE LVFDELAPLW VQDVVEFGPS DHPWTPYDGL DAVGFLPLLW  240
EY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1736102572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12832KRPRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.199313e-49stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG049100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3538521e-114DQ353852.1 Triticum aestivum AP2 domain transcription factor TaDREB2 mRNA, complete cds.
GenBankGU7850081e-114GU785008.1 Triticum turgidum subsp. durum drought responsive element binding transcription factor 2 (DREB2) gene, promoter region and complete cds.
GenBankHG6703061e-114HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818661.11e-111ethylene-responsive transcription factor ERF035-like
SwissprotQ9LYD38e-46DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A2T7DSK01e-113A0A2T7DSK0_9POAL; Uncharacterized protein
STRINGPavir.Eb00249.1.p1e-172(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.16e-31ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]