PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG054300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 504aa    MW: 51778.8 Da    PI: 8.0331
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG054300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.81.2e-29248306259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+aed++++++tYeg+Hnh+
  Pavir.5NG054300.1.p 248 PDGCQWRKYGQKISKGNPCPRAYYRCTVApHCPVRKQVQRCAEDTSILITTYEGQHNHQ 306
                          69**************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-31232308IPR003657WRKY domain
SuperFamilySSF1182901.96E-26240308IPR003657WRKY domain
PROSITE profilePS5081127.577242308IPR003657WRKY domain
SMARTSM007749.8E-35247307IPR003657WRKY domain
PfamPF031061.4E-25249306IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MEVAVERPTP VKEEKRADAK PEMTAMGSPL PIVFESFPST QSDASIKQEQ RTLEAAKAEM  60
GEVREENERL KTTLSRIVSQ YQSLHTHFLD VVKVHEQAAK AKLPAAPAPS LPTGADDADD  120
LVSLSLGTRS NGARRKGHER SSSSSGTAET AADEGQLSLG LGIARRSGLS ADDDKASGAS  180
AAPVLNLSSD SSSAGDTAKP PAKDADACPP GTARKSPSAG EGADDEVQQQ AKKARVSVRV  240
KCNTPTMPDG CQWRKYGQKI SKGNPCPRAY YRCTVAPHCP VRKQVQRCAE DTSILITTYE  300
GQHNHQLPPA ATAMASTTSA AAAMLTSGST SSTSASLAHG HHLPLAAAGL LGPTTMVSTA  360
AACPTITLDL TTPAAPHSLM HPSSYAAAAA AGYESKAVPA TWSSGYLAYG AATPSYYGKS  420
SPALGHLFGG GLGGSSRPEQ LYGAQTYLQR TSSLGAGHGA VAPAVTDTIA KAITSDPSFQ  480
TALVAAITSV MGRGGGAATQ DQK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21234310176WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231240KKARVSVRVK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG054300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586050.0KU058605.1 UNVERIFIED: Panicum miliaceum WRKY19-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817880.10.0probable WRKY transcription factor 72
TrEMBLA0A3L6SPC50.0A0A3L6SPC5_PANMI; Putative WRKY transcription factor 72
STRINGPavir.J22708.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120812938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.17e-46WRKY DNA-binding protein 61