PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG067400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 205aa    MW: 21673.9 Da    PI: 10.8838
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG067400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.88.6e-12112170260
                          XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                          ke  r +r+ +NR++A+  R+RKka++ eLe k+k Le  N +L +++++l++e  +l+
  Pavir.5NG067400.1.p 112 KEQNRLKRLLRNRVSAQQARERKKAYLTELEAKAKDLELRNAELEQRVSTLQNENNTLR 170
                          78899*************************************************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.0E-13111175IPR004827Basic-leucine zipper domain
PfamPF001702.6E-10112173IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.162113176IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.06E-11116173No hitNo description
Gene3DG3DSA:1.20.5.1704.1E-16116175No hitNo description
CDDcd147041.27E-15116166No hitNo description
PROSITE patternPS000360118133IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MAAQEQEQDK QQAKTSTTSS LPSSSERSSS SAPNNLREGA GVDACMSQGW RATRRYGGVP  60
EMGGASASAS SGAGADERPK EDSKQGQLVA ATGAQGQPPA AGKKRGRTAG DKEQNRLKRL  120
LRNRVSAQQA RERKKAYLTE LEAKAKDLEL RNAELEQRVS TLQNENNTLR QILKNTTAHA  180
SKRSSGGGAG AGKGGDKKHH FTKS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.207990.0root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269|PubMed:15178762}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG067400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0350881e-143BT035088.1 Zea mays full-length cDNA clone ZM_BFb0038J16 mRNA, complete cds.
GenBankHQ8587081e-143HQ858708.1 Zea mays clone UT1164 bZIP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815107.19e-77transcription factor HY5-like
RefseqXP_025815108.19e-77transcription factor HY5-like
SwissprotQ9SM501e-37HY5_SOLLC; Transcription factor HY5
TrEMBLA0A3L6SSD37e-80A0A3L6SSD3_PANMI; Transcription factor HY5-like
STRINGPavir.Eb00436.1.p1e-87(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140838111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.18e-32bZIP family protein
Publications ? help Back to Top
  1. Wang F, et al.
    Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato.
    Plant Physiol., 2018. 176(2): p. 1311-1326
    [PMID:29146776]
  2. Liu CC, et al.
    The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato.
    Plant Cell Environ., 2018. 41(8): p. 1762-1775
    [PMID:29566255]