PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5NG067400.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 144aa MW: 15187.9 Da PI: 11.2013

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5NG067400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.8	3e-10	51	94	2	45
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 ke r +r+ +NR++A+ R+RKka++ eLe k+k Le N +L Pavir.5NG067400.2.p 51 KEQNRLKRLLRNRVSAQQARERKKAYLTELEAKAKDLELRNAEL 94 78899***********************************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.0E-13	50	114	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.4E-10	51	112	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	12.162	52	115	IPR004827	Basic-leucine zipper domain
CDD	cd14704	1.06E-14	55	105	No hit	No description
SuperFamily	SSF57959	5.06E-12	55	112	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.9E-16	55	114	No hit	No description
PROSITE pattern	PS00036	0	57	72	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MGGASASASS GAGADERPKE DSKQGQLVAA TGAQGQPPAA GKKRGRTAGD KEQNRLKRLL 60 RNRVSAQQAR ERKKAYLTEL EAKAKDLELR NAELEQRVST LQNENNTLRQ ILKNTTAHAS 120 KRSSGGGAGA GKGGDKKHHF TKS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.20799	0.0	root\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269\|PubMed:15178762}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5NG067400.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT035088	1e-124	BT035088.1 Zea mays full-length cDNA clone ZM_BFb0038J16 mRNA, complete cds.
GenBank	HQ858708	1e-124	HQ858708.1 Zea mays clone UT1164 bZIP transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815107.1	2e-71	transcription factor HY5-like
Refseq	XP_025815108.1	2e-71	transcription factor HY5-like
Swissprot	Q9SM50	2e-35	HY5_SOLLC; Transcription factor HY5
TrEMBL	A0A3L6SSD3	3e-75	A0A3L6SSD3_PANMI; Transcription factor HY5-like
STRING	Pavir.Eb00436.1.p	1e-95	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11260.1	2e-32	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pavir.5NG067400.2.p

Publications ? help Back to Top
Wang F, et al. Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato. Plant Physiol., 2018. 176(2): p. 1311-1326 [PMID:29146776] Liu CC, et al. The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato. Plant Cell Environ., 2018. 41(8): p. 1762-1775 [PMID:29566255]