PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG079300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 258aa    MW: 27837.9 Da    PI: 5.4466
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG079300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.9e-1979128255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr++  +g+WvAeIr+p   + r +r +lg+f ta eAa a+++a+k+++g
  Pavir.5NG079300.1.p  79 AYRGVRQRT-WGKWVAEIREP---N-RgRRLWLGSFPTAVEAAHAYDEAAKAMYG 128
                          59****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-1378128IPR001471AP2/ERF domain
PROSITE profilePS5103221.64179136IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2079137IPR016177DNA-binding domain
SMARTSM003803.4E-3479142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-3080137IPR001471AP2/ERF domain
PRINTSPR003674.0E-98091IPR001471AP2/ERF domain
CDDcd000182.26E-2980138No hitNo description
PRINTSPR003674.0E-9102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDLGHGGQGG EGDSSGGQVR KKRARRKSTG PDSIAETIKW WKEQNQKLQD ESGSRKAPAK  60
GSKKGCMAGK GGPENGNCAY RGVRQRTWGK WVAEIREPNR GRRLWLGSFP TAVEAAHAYD  120
EAAKAMYGAK ARVNFSENSP DANSGCTSAL SLLASSVPAV ALHGFNEKDE VESVETEVHD  180
VKAQVNNDLG SIHVECTSVE VLQSGESVLQ KEGSVSYDYF NVEEVVEMII IELNADKKIE  240
VHEECLGGDD GFSLFAY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1580135359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.205640.0callus| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG079300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1327440.0HQ132744.1 Setaria italica dehydration responsive element-binding protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816059.10.0dehydration-responsive element-binding protein 2A-like
SwissprotA2WL191e-122DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
TrEMBLA0A3L6QX700.0A0A3L6QX70_PANMI; Dehydration-responsive element-binding protein 2A isoform X1
STRINGPavir.J37967.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73153551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.11e-35ERF family protein