PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG084900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-X1
Protein Properties Length: 909aa    MW: 99565 Da    PI: 8.4514
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG084900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.91.3e-05213229420
             zf-NF-X1   4 HkCqklCHeGpCppCpq 20 
                          H+C  lCH+GpCppCp+
  Pavir.5NG084900.1.p 213 HTCLLLCHPGPCPPCPA 229
                          ***************95 PP
2zf-NF-X118.35.1e-06264281118
             zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                          CG H+C   CH GpCppC
  Pavir.5NG084900.1.p 264 CGLHRCPVNCHDGPCPPC 281
                          ****************** PP
3zf-NF-X119.62e-06371390119
             zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                          CG+H+C + CH+GpC++ C+
  Pavir.5NG084900.1.p 371 CGRHRCPERCHRGPCDEtCR 390
                          *******************8 PP
4zf-NF-X117.49.6e-06424443120
             zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                          CG+H C++ C+ G+CppC++
  Pavir.5NG084900.1.p 424 CGRHACKRRCCAGDCPPCSE 443
                          ******************85 PP
5zf-NF-X120.78.7e-07451470120
             zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                          CG+HkC ++CH+G C pCp+
  Pavir.5NG084900.1.p 451 CGNHKCLSPCHRGACSPCPL 470
                          ******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS013590109161IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500898.521109162IPR001841Zinc finger, RING-type
SMARTSM004380.0052211229IPR000967Zinc finger, NF-X1-type
PfamPF014220.0039213228IPR000967Zinc finger, NF-X1-type
CDDcd060081.07E-8254302No hitNo description
SMARTSM004380.0013264283IPR000967Zinc finger, NF-X1-type
PfamPF014221.2E-4264281IPR000967Zinc finger, NF-X1-type
CDDcd060083.00E-7307347No hitNo description
SMARTSM004380.0092317336IPR000967Zinc finger, NF-X1-type
PfamPF014220.2317335IPR000967Zinc finger, NF-X1-type
CDDcd060086.87E-9361410No hitNo description
SMARTSM004380.0029371391IPR000967Zinc finger, NF-X1-type
PfamPF014228.3E-4371390IPR000967Zinc finger, NF-X1-type
CDDcd060086.81E-9414462No hitNo description
SMARTSM004380.0069424443IPR000967Zinc finger, NF-X1-type
PfamPF014220.0015424442IPR000967Zinc finger, NF-X1-type
CDDcd060083.64E-10441489No hitNo description
SMARTSM004380.0083451470IPR000967Zinc finger, NF-X1-type
PfamPF014226.1E-5451469IPR000967Zinc finger, NF-X1-type
SMARTSM0043825514529IPR000967Zinc finger, NF-X1-type
PfamPF0142236518528IPR000967Zinc finger, NF-X1-type
SMARTSM0043897619637IPR000967Zinc finger, NF-X1-type
PfamPF014220.53619629IPR000967Zinc finger, NF-X1-type
SMARTSM004380.025671689IPR000967Zinc finger, NF-X1-type
PfamPF014220.24671688IPR000967Zinc finger, NF-X1-type
SMARTSM004382.6734755IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 909 aa     Download sequence    Send to blast
MPFSYAAAAA GSSCRKTNRI STAAAATARP PAPSPSLAPA PPAANPSAAS DSDPSSYSSS  60
SGDEADLTAS DSATASVVSA YLSVAGEGAD LSKVGIFLSS AARRRSPPCL ICFDPIRPSD  120
PVWSCSSSCF AILHLPCIQS WAHQSASGAA VPCLTWGCPK CRFAYPKSQT PTSYLCFCSK  180
TVDPTPDPWI LPHSCGDVCR RRLNANLDSG CDHTCLLLCH PGPCPPCPAV VPNAPCFCGA  240
HREPRRCAHQ RYSCAGKCNK RLSCGLHRCP VNCHDGPCPP CAVRGKHKCE CGETMEEKLC  300
SQRVFQCKRE CGGMLDCGKH RCERGCHGGK CGECPLRGRR TCPCGKKDYP KLECDAEAAT  360
CGSTCEKVLG CGRHRCPERC HRGPCDETCR LVITKSCRCG GLKKEVPCYQ ELTCERKCQR  420
LRNCGRHACK RRCCAGDCPP CSETCDRKLR CGNHKCLSPC HRGACSPCPL MKTISCACGK  480
TCFEVPCGTE KNQKPPKCSK KCNIPRLCRH KLECRPHKCH YGACPPCKLT CGEELSCSHI  540
CKERCHGPIS PPNPEFTLKP TKRKMEKQIE CTPGIPCPPC KEVVLVPCFG QHLGQERAMP  600
CSKWRPFPCQ NLCGNPLLCG NHYCTKSCHV LEVPLKQIEG DPIASVNKEN ALAEPCEQCD  660
LPCQRVGEPP CSHRCPLPCH LSDCPPCKVL VKKPCHCGAM VHAFECVYFN NLKAKEQLKV  720
RSCGGPCHRK LPNCPHLCSE VCHPGTCPSV DQCMKKVNVR CACNTLKQEW ICQDVLKKYR  780
NSGRDPKEVP KSQFGVGLLA CGEDCKKKVK VPDPELHLRK SQETKSQAVE VANVPKRRKR  840
RDRGQDVEVS KFQEVKAYVL RVLLIILLSI IIAAGLYLLW KGIFRLSDWM NEMEEQRARQ  900
RHPRGAML*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1834840PKRRKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.108370.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Constitutively expressed in mesophyll and guard cells. {ECO:0000269|PubMed:22073231}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG084900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968270.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLK3XEA60.0K3XEA6_SETIT; Uncharacterized protein
STRINGSi000223m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107733537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors